Guide to the Human Genome
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Name: LRP1 Sequence: fasta or formatted (4544aa) NCBI GI: 126012562
Description:

low density lipoprotein-related protein 1

Referenced in:

Epidermal Growth Factor
Lipoproteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5        249           3
 C cysteine            7.3        331           1
 D aspartate           8.6        393           3
 E glutamate           5.2        235           2
 F phenylalanine       2.9        133           2
 G glycine             8.3        376           3
 H histidine           2.8        129           2
 I isoleucine          4.3        196           2
 K lysine              3.8        173           2
 L leucine             6.7        305           7
 M methionine          1.6         72           2
 N asparagine          5.5        249           2
 P proline             5.1        230           3
 Q glutamine           3.6        165           4
 R arginine            6.1        277           2
 S serine              6.8        308           3
 T threonine           5.7        260           2
 V valine              5.4        245           2
 W tryptophan          1.9         88           2
 Y tyrosine            2.9        130           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   low density lipoprotein-related protein 1 
LRP1B                 0.616   low density lipoprotein-related protein 1B precursor...
LRP2                  0.289   low density lipoprotein-related protein 2 
LRP4                  0.112   low density lipoprotein receptor-related protein 4 ...
LRP6                  0.081   low density lipoprotein receptor-related protein 6 ...
LRP5                  0.080   low density lipoprotein receptor-related protein 5 ...
VLDLR                 0.052   very low density lipoprotein receptor isoform b [Hom...
VLDLR                 0.052   very low density lipoprotein receptor isoform a [Hom...
LRP8                  0.050   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.050   low density lipoprotein receptor-related protein 8 i...
LDLR                  0.049   low density lipoprotein receptor precursor 
SORL1                 0.046   sortilin-related receptor containing LDLR class A rep...
LRP8                  0.040   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.038   low density lipoprotein receptor-related protein 8 i...
EGF                   0.025   epidermal growth factor (beta-urogastrone) 
CORIN                 0.018   corin 
SSPO                  0.017   SCO-spondin 
NID1                  0.016   nidogen 1 precursor 
LRP5L                 0.015   low density lipoprotein receptor-related protein 5-l...
LRP5L                 0.015   low density lipoprotein receptor-related protein 5-...
NID2                  0.013   nidogen 2 precursor 
ST14                  0.012   matriptase 
NOTCH4                0.011   notch4 preproprotein 
HSPG2                 0.011   heparan sulfate proteoglycan 2 
NOTCH2                0.010   notch 2 preproprotein 
DNER                  0.010   delta-notch-like EGF repeat-containing transmembran...
VWDE                  0.009   von Willebrand factor D and EGF domains 
LDLRAD3               0.009   low density lipoprotein receptor class A domain cont...
NOTCH3                0.009   Notch homolog 3 
TNXB                  0.009   tenascin XB isoform 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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