Guide to the Human Genome
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Name: CKAP5 Sequence: fasta or formatted (1972aa) NCBI GI: 57222563
Description:

colonic and hepatic tumor over-expressed protein isoform b

Referenced in:

Cytoskeleton
Small RNAs in RNA Processing
Spindle, M phase, and Meiosis

Other entries for this name:
alt prot [2032aa] colonic and hepatic tumor over-expressed protein isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1        159           3
 C cysteine            1.5         29           1
 D aspartate           5.4        106           2
 E glutamate           8.3        164           3
 F phenylalanine       2.9         57           2
 G glycine             5.4        106           3
 H histidine           1.6         32           2
 I isoleucine          5.5        109           2
 K lysine             10.6        209           3
 L leucine            10.8        213           2
 M methionine          2.7         54           2
 N asparagine          4.0         79           2
 P proline             5.2        102           2
 Q glutamine           4.1         80           3
 R arginine            3.6         71           2
 S serine              7.2        141           4
 T threonine           4.9         96           3
 V valine              6.2        123           2
 W tryptophan          0.9         18           1
 Y tyrosine            1.2         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   colonic and hepatic tumor over-expressed protein iso... 
CKAP5                 0.976   colonic and hepatic tumor over-expressed protein iso...
CLASP2                0.009   CLIP-associating protein 2 
CLASP1                0.008   CLIP-associating protein 1 isoform 3 
CLASP1                0.008   CLIP-associating protein 1 isoform 2 
CLASP1                0.008   CLIP-associating protein 1 isoform 1 
COL4A3                0.005   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.005   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.005   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.005   alpha 3 type IV collagen isoform 1 precursor 
EMID1                 0.004   EMI domain containing 1 
COL11A2               0.004   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.004   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.004   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL2A1                0.004   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.004   collagen, type II, alpha 1 isoform 2 precursor [Hom...
BRD2                  0.004   bromodomain containing 2 
BRD2                  0.004   bromodomain containing 2 
COL1A1                0.004   alpha 1 type I collagen preproprotein 
COL11A1               0.004   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.004   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.004   alpha 1 type XI collagen isoform A preproprotein [Ho...
TCOF1                 0.004   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.004   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.004   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.004   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.004   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.004   Treacher Collins-Franceschetti syndrome 1 isoform c ...
NEFH                  0.004   neurofilament, heavy polypeptide 200kDa 
BBC3                  0.004   BCL2 binding component 3 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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