Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: BRD2 Sequence: fasta or formatted (801aa) NCBI GI: 164419758
Description:

bromodomain containing 2

Referenced in:

Bromodomain Family

Other entries for this name:
alt mRNA [801aa] bromodomain containing 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         66           3
 C cysteine            0.6          5           1
 D aspartate           4.5         36           2
 E glutamate           8.7         70           6
 F phenylalanine       1.6         13           1
 G glycine             5.2         42           3
 H histidine           2.5         20           1
 I isoleucine          2.9         23           2
 K lysine             10.2         82           4
 L leucine             8.7         70           2
 M methionine          2.1         17           1
 N asparagine          2.6         21           2
 P proline            10.2         82           4
 Q glutamine           4.1         33           3
 R arginine            5.0         40           2
 S serine             11.1         89          11
 T threonine           4.2         34           3
 V valine              4.4         35           2
 W tryptophan          0.5          4           1
 Y tyrosine            2.4         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   bromodomain containing 2 
BRD2                  1.000   bromodomain containing 2 
BRD3                  0.533   bromodomain containing protein 3 
BRD4                  0.449   bromodomain-containing protein 4 isoform short 
BRD4                  0.449   bromodomain-containing protein 4 isoform long 
BRDT                  0.400   testis-specific bromodomain protein 
BRDT                  0.400   testis-specific bromodomain protein 
CREBBP                0.042   CREB binding protein isoform b 
CREBBP                0.042   CREB binding protein isoform a 
KAT2B                 0.037   K(lysine) acetyltransferase 2B 
EP300                 0.037   E1A binding protein p300 
BPTF                  0.034   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.034   bromodomain PHD finger transcription factor isoform ...
BAZ1A                 0.031   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ1A                 0.031   bromodomain adjacent to zinc finger domain, 1A isofo...
TAF1                  0.030   TBP-associated factor 1 isoform 2 
TAF1                  0.030   TBP-associated factor 1 isoform 1 
BAZ1B                 0.030   bromodomain adjacent to zinc finger domain, 1B [Homo...
CECR2                 0.030   cat eye syndrome chromosome region, candidate 2 [Ho...
KAT2A                 0.029   general control of amino acid synthesis 5-like 2 [H...
TRIM66                0.029   tripartite motif-containing 66 
BAZ2B                 0.029   bromodomain adjacent to zinc finger domain, 2B [Homo...
TRIM33                0.028   tripartite motif-containing 33 protein isoform beta ...
BAZ2A                 0.028   bromodomain adjacent to zinc finger domain, 2A [Homo...
PELP1                 0.027   proline, glutamic acid and leucine rich protein 1 [...
BRD8                  0.027   bromodomain containing 8 isoform 3 
BRD8                  0.027   bromodomain containing 8 isoform 2 
BRD8                  0.027   bromodomain containing 8 isoform 1 
AFF1                  0.027   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
TRIM24                0.026   transcriptional intermediary factor 1 alpha isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press