Guide to the Human Genome
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Name: CLASP2 Sequence: fasta or formatted (1506aa) NCBI GI: 57863301
Description:

CLIP-associating protein 2

Referenced in:

Dynein and Dynactin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5        128           3
 C cysteine            1.3         19           1
 D aspartate           6.1         92           3
 E glutamate           5.6         85           2
 F phenylalanine       3.1         46           2
 G glycine             6.0         91           2
 H histidine           2.0         30           2
 I isoleucine          4.2         63           2
 K lysine              5.8         87           2
 L leucine            10.4        156           5
 M methionine          2.3         35           1
 N asparagine          3.5         53           1
 P proline             4.6         70           2
 Q glutamine           4.1         61           2
 R arginine            6.6         99           3
 S serine             12.0        181           5
 T threonine           5.1         77           3
 V valine              6.2         93           2
 W tryptophan          0.7         10           1
 Y tyrosine            2.0         30           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CLIP-associating protein 2 
CLASP1                0.672   CLIP-associating protein 1 isoform 1 
CLASP1                0.651   CLIP-associating protein 1 isoform 2 
CLASP1                0.648   CLIP-associating protein 1 isoform 3 
FAM179B               0.012   hypothetical protein LOC23116 
CKAP5                 0.011   colonic and hepatic tumor over-expressed protein iso...
CKAP5                 0.011   colonic and hepatic tumor over-expressed protein iso...
DSPP                  0.009   dentin sialophosphoprotein preproprotein 
SRRM2                 0.009   splicing coactivator subunit SRm300 
SFRS4                 0.008   splicing factor, arginine/serine-rich 4 
SFRS6                 0.008   arginine/serine-rich splicing factor 6 
FLG                   0.007   filaggrin 
MUC21                 0.007   mucin 21 
MUC12                 0.007   PREDICTED: mucin 12 
CDKN2AIP              0.007   CDKN2A interacting protein 
CCNL2                 0.007   cyclin L2 isoform A 
CAND1                 0.007   TIP120 protein 
HRNR                  0.006   hornerin 
USP31                 0.006   ubiquitin specific peptidase 31 
TCOF1                 0.006   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.006   Treacher Collins-Franceschetti syndrome 1 isoform b ...
MARK3                 0.006   MAP/microtubule affinity-regulating kinase 3 isofor...
MARK3                 0.006   MAP/microtubule affinity-regulating kinase 3 isofor...
MARK3                 0.006   MAP/microtubule affinity-regulating kinase 3 isofor...
MARK3                 0.006   MAP/microtubule affinity-regulating kinase 3 isoform...
CAND2                 0.005   TBP-interacting protein isoform 1 
LOC100293409          0.005   PREDICTED: similar to Mucin-19 
LOC100291118          0.005   PREDICTED: hypothetical protein XP_002347351 
LOC100287737          0.005   PREDICTED: hypothetical protein XP_002343203 
MUC12                 0.005   PREDICTED: mucin 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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