CLASP1 13175

Name: CLASP1	Sequence: fasta or formatted (1479aa)		NCBI GI: 214010173
Description: CLIP-associating protein 1 isoform 2		Referenced in: Dynein and Dynactin
Other entries for this name: alt prot [1471aa] CLIP-associating protein 1 isoform 3 alt prot [1538aa] CLIP-associating protein 1 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.3 108 3 C cysteine 1.1 17 1 D aspartate 6.4 94 3 E glutamate 5.5 81 2 F phenylalanine 2.8 41 2 G glycine 5.7 85 2 H histidine 2.4 35 1 I isoleucine 5.1 76 3 K lysine 6.0 89 3 L leucine 10.8 159 5 M methionine 1.6 23 1 N asparagine 4.0 59 1 P proline 4.1 60 2 Q glutamine 3.9 58 2 R arginine 7.0 104 3 S serine 12.1 179 5 T threonine 5.9 88 3 V valine 5.8 86 2 W tryptophan 0.6 9 1 Y tyrosine 1.9 28 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 CLIP-associating protein 1 isoform 2 CLASP1 0.992 CLIP-associating protein 1 isoform 3 CLASP1 0.971 CLIP-associating protein 1 isoform 1 CLASP2 0.667 CLIP-associating protein 2 FAM179B 0.013 hypothetical protein LOC23116 MUC21 0.012 mucin 21 SRRM2 0.011 splicing coactivator subunit SRm300 CKAP5 0.010 colonic and hepatic tumor over-expressed protein iso... CKAP5 0.010 colonic and hepatic tumor over-expressed protein iso... FLJ37078 0.010 hypothetical protein LOC222183 SCAF1 0.008 SR-related CTD-associated factor 1 MUC17 0.008 mucin 17 LOC100130716 0.008 PREDICTED: similar to Mucin-12 CRKRS 0.008 Cdc2-related kinase, arginine/serine-rich isoform 2... CRKRS 0.008 Cdc2-related kinase, arginine/serine-rich isoform 1... TRIP12 0.008 thyroid hormone receptor interactor 12 LOC729792 0.007 PREDICTED: hypothetical protein LOC729792 0.007 PREDICTED: hypothetical protein LOC729792 0.007 PREDICTED: hypothetical protein LOC100294501 0.007 PREDICTED: hypothetical protein LOC100294249 0.007 PREDICTED: hypothetical protein XP_002344067 LOC100294238 0.007 PREDICTED: hypothetical protein LOC100294204 0.007 PREDICTED: hypothetical protein LOC100294136 0.007 PREDICTED: hypothetical protein LOC100294091 0.007 PREDICTED: hypothetical protein LOC730401 0.007 PREDICTED: hypothetical protein MED1 0.007 mediator complex subunit 1 LOC100131251 0.007 PREDICTED: hypothetical protein LOC100131251 0.007 PREDICTED: hypothetical protein NUP153 0.007 nucleoporin 153kDa Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.