TCOF1 12214

Name: TCOF1	Sequence: fasta or formatted (1488aa)		NCBI GI: 207113160
Description: Treacher Collins-Franceschetti syndrome 1 isoform d		Referenced in: Nucleus and Nucleolus
Other entries for this name: alt prot [1451aa] Treacher Collins-Franceschetti syndrome 1 isoform e alt prot [1412aa] Treacher Collins-Franceschetti syndrome 1 isoform f alt prot [1411aa] Treacher Collins-Franceschetti syndrome 1 isoform b alt prot [1450aa] Treacher Collins-Franceschetti syndrome 1 isoform a alt prot [958aa] Treacher Collins-Franceschetti syndrome 1 isoform c
Composition: Amino acid Percentage Count Longest homopolymer A alanine 14.8 220 3 C cysteine 0.3 4 1 D aspartate 3.8 57 2 E glutamate 9.4 140 5 F phenylalanine 0.2 3 1 G glycine 7.7 114 2 H histidine 0.5 7 2 I isoleucine 1.0 15 1 K lysine 11.3 168 8 L leucine 4.2 62 2 M methionine 0.9 14 1 N asparagine 1.3 20 1 P proline 9.2 137 2 Q glutamine 5.5 82 2 R arginine 3.4 50 2 S serine 13.6 203 4 T threonine 6.7 99 2 V valine 5.7 85 2 W tryptophan 0.3 4 1 Y tyrosine 0.3 4 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Treacher Collins-Franceschetti syndrome 1 isoform d... TCOF1 0.968 Treacher Collins-Franceschetti syndrome 1 isoform a ... TCOF1 0.967 Treacher Collins-Franceschetti syndrome 1 isoform e... TCOF1 0.865 Treacher Collins-Franceschetti syndrome 1 isoform b ... TCOF1 0.863 Treacher Collins-Franceschetti syndrome 1 isoform f... TCOF1 0.636 Treacher Collins-Franceschetti syndrome 1 isoform c ... NACA 0.046 nascent polypeptide-associated complex alpha subuni... NOLC1 0.044 nucleolar and coiled-body phosphoprotein 1 PCLO 0.035 piccolo isoform 2 PCLO 0.035 piccolo isoform 1 MUC17 0.035 mucin 17 SRRM2 0.034 splicing coactivator subunit SRm300 PRG4 0.033 proteoglycan 4 isoform B PRG4 0.033 proteoglycan 4 isoform A NEFH 0.032 neurofilament, heavy polypeptide 200kDa PRG4 0.031 proteoglycan 4 isoform D PRG4 0.031 proteoglycan 4 isoform C GPRIN1 0.030 G protein-regulated inducer of neurite outgrowth 1 ... MUC12 0.029 PREDICTED: mucin 12 FLJ22184 0.028 PREDICTED: hypothetical protein FLJ22184 MUC12 0.026 PREDICTED: mucin 12 AKAP12 0.026 A kinase (PRKA) anchor protein 12 isoform 1 AKAP12 0.026 A kinase (PRKA) anchor protein 12 isoform 2 TAF4 0.025 TBP-associated factor 4 MUC4 0.025 mucin 4 isoform a LOC729792 0.025 PREDICTED: hypothetical protein LOC100294136 0.025 PREDICTED: hypothetical protein LOC100294091 0.025 PREDICTED: hypothetical protein SCAF1 0.025 SR-related CTD-associated factor 1 MUC12 0.024 PREDICTED: mucin 12, cell surface associated Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.