TCOF1 33268

Name: TCOF1	Sequence: fasta or formatted (1411aa)		NCBI GI: 57164975
Description: Treacher Collins-Franceschetti syndrome 1 isoform b		Referenced in: Nucleus and Nucleolus
Other entries for this name: alt prot [1488aa] Treacher Collins-Franceschetti syndrome 1 isoform d alt prot [1451aa] Treacher Collins-Franceschetti syndrome 1 isoform e alt prot [1412aa] Treacher Collins-Franceschetti syndrome 1 isoform f alt prot [1450aa] Treacher Collins-Franceschetti syndrome 1 isoform a alt prot [958aa] Treacher Collins-Franceschetti syndrome 1 isoform c
Composition: Amino acid Percentage Count Longest homopolymer A alanine 14.8 209 3 C cysteine 0.3 4 1 D aspartate 4.0 56 2 E glutamate 9.1 129 5 F phenylalanine 0.2 3 1 G glycine 7.6 107 2 H histidine 0.5 7 2 I isoleucine 1.1 15 1 K lysine 11.2 158 8 L leucine 4.3 61 2 M methionine 1.0 14 1 N asparagine 1.4 20 1 P proline 9.0 127 2 Q glutamine 5.6 79 2 R arginine 3.3 47 2 S serine 13.6 192 4 T threonine 6.8 96 2 V valine 5.6 79 2 W tryptophan 0.3 4 1 Y tyrosine 0.3 4 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Treacher Collins-Franceschetti syndrome 1 isoform b ... TCOF1 0.998 Treacher Collins-Franceschetti syndrome 1 isoform f... TCOF1 0.939 Treacher Collins-Franceschetti syndrome 1 isoform d... TCOF1 0.906 Treacher Collins-Franceschetti syndrome 1 isoform a ... TCOF1 0.904 Treacher Collins-Franceschetti syndrome 1 isoform e... TCOF1 0.554 Treacher Collins-Franceschetti syndrome 1 isoform c ... NACA 0.045 nascent polypeptide-associated complex alpha subuni... NOLC1 0.043 nucleolar and coiled-body phosphoprotein 1 PCLO 0.038 piccolo isoform 2 PCLO 0.038 piccolo isoform 1 MUC17 0.036 mucin 17 PRG4 0.034 proteoglycan 4 isoform B PRG4 0.034 proteoglycan 4 isoform A NEFH 0.033 neurofilament, heavy polypeptide 200kDa PRG4 0.032 proteoglycan 4 isoform D PRG4 0.032 proteoglycan 4 isoform C SRRM2 0.030 splicing coactivator subunit SRm300 MUC12 0.030 PREDICTED: mucin 12 AKAP12 0.028 A kinase (PRKA) anchor protein 12 isoform 1 AKAP12 0.028 A kinase (PRKA) anchor protein 12 isoform 2 GPRIN1 0.028 G protein-regulated inducer of neurite outgrowth 1 ... LOC100294501 0.028 PREDICTED: hypothetical protein LOC729792 0.028 PREDICTED: hypothetical protein LOC100294136 0.028 PREDICTED: hypothetical protein LOC100294091 0.028 PREDICTED: hypothetical protein MUC12 0.027 PREDICTED: mucin 12 SCAF1 0.027 SR-related CTD-associated factor 1 LOC729792 0.027 PREDICTED: hypothetical protein LOC729792 0.027 PREDICTED: hypothetical protein LOC100294238 0.027 PREDICTED: hypothetical protein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.