Guide to the Human Genome
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Name: TCOF1 Sequence: fasta or formatted (1411aa) NCBI GI: 57164975
Description:

Treacher Collins-Franceschetti syndrome 1 isoform b

Referenced in:

Nucleus and Nucleolus

Other entries for this name:
alt prot [1488aa] Treacher Collins-Franceschetti syndrome 1 isoform d
alt prot [1451aa] Treacher Collins-Franceschetti syndrome 1 isoform e
alt prot [1412aa] Treacher Collins-Franceschetti syndrome 1 isoform f
alt prot [1450aa] Treacher Collins-Franceschetti syndrome 1 isoform a
alt prot [958aa] Treacher Collins-Franceschetti syndrome 1 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.8        209           3
 C cysteine            0.3          4           1
 D aspartate           4.0         56           2
 E glutamate           9.1        129           5
 F phenylalanine       0.2          3           1
 G glycine             7.6        107           2
 H histidine           0.5          7           2
 I isoleucine          1.1         15           1
 K lysine             11.2        158           8
 L leucine             4.3         61           2
 M methionine          1.0         14           1
 N asparagine          1.4         20           1
 P proline             9.0        127           2
 Q glutamine           5.6         79           2
 R arginine            3.3         47           2
 S serine             13.6        192           4
 T threonine           6.8         96           2
 V valine              5.6         79           2
 W tryptophan          0.3          4           1
 Y tyrosine            0.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Treacher Collins-Franceschetti syndrome 1 isoform b ... 
TCOF1                 0.998   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.939   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.906   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.904   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.554   Treacher Collins-Franceschetti syndrome 1 isoform c ...
NACA                  0.045   nascent polypeptide-associated complex alpha subuni...
NOLC1                 0.043   nucleolar and coiled-body phosphoprotein 1 
PCLO                  0.038   piccolo isoform 2 
PCLO                  0.038   piccolo isoform 1 
MUC17                 0.036   mucin 17 
PRG4                  0.034   proteoglycan 4 isoform B 
PRG4                  0.034   proteoglycan 4 isoform A 
NEFH                  0.033   neurofilament, heavy polypeptide 200kDa 
PRG4                  0.032   proteoglycan 4 isoform D 
PRG4                  0.032   proteoglycan 4 isoform C 
SRRM2                 0.030   splicing coactivator subunit SRm300 
MUC12                 0.030   PREDICTED: mucin 12 
AKAP12                0.028   A kinase (PRKA) anchor protein 12 isoform 1 
AKAP12                0.028   A kinase (PRKA) anchor protein 12 isoform 2 
GPRIN1                0.028   G protein-regulated inducer of neurite outgrowth 1 ...
LOC100294501          0.028   PREDICTED: hypothetical protein 
LOC729792             0.028   PREDICTED: hypothetical protein 
LOC100294136          0.028   PREDICTED: hypothetical protein 
LOC100294091          0.028   PREDICTED: hypothetical protein 
MUC12                 0.027   PREDICTED: mucin 12 
SCAF1                 0.027   SR-related CTD-associated factor 1 
LOC729792             0.027   PREDICTED: hypothetical protein 
LOC729792             0.027   PREDICTED: hypothetical protein 
LOC100294238          0.027   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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