TCOF1 33270

Name: TCOF1	Sequence: fasta or formatted (958aa)		NCBI GI: 57164979
Description: Treacher Collins-Franceschetti syndrome 1 isoform c		Referenced in: Nucleus and Nucleolus
Other entries for this name: alt prot [1488aa] Treacher Collins-Franceschetti syndrome 1 isoform d alt prot [1451aa] Treacher Collins-Franceschetti syndrome 1 isoform e alt prot [1412aa] Treacher Collins-Franceschetti syndrome 1 isoform f alt prot [1411aa] Treacher Collins-Franceschetti syndrome 1 isoform b alt prot [1450aa] Treacher Collins-Franceschetti syndrome 1 isoform a
Composition: Amino acid Percentage Count Longest homopolymer A alanine 16.8 161 3 C cysteine 0.2 2 1 D aspartate 3.4 33 2 E glutamate 10.5 101 5 F phenylalanine 0.2 2 1 G glycine 7.8 75 2 H histidine 0.5 5 2 I isoleucine 0.8 8 1 K lysine 9.5 91 2 L leucine 3.4 33 2 M methionine 0.9 9 1 N asparagine 1.1 11 1 P proline 9.6 92 2 Q glutamine 5.2 50 2 R arginine 3.2 31 2 S serine 13.8 132 4 T threonine 6.1 58 2 V valine 6.2 59 2 W tryptophan 0.2 2 1 Y tyrosine 0.3 3 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Treacher Collins-Franceschetti syndrome 1 isoform c ... TCOF1 0.995 Treacher Collins-Franceschetti syndrome 1 isoform e... TCOF1 0.995 Treacher Collins-Franceschetti syndrome 1 isoform d... TCOF1 0.995 Treacher Collins-Franceschetti syndrome 1 isoform a ... TCOF1 0.784 Treacher Collins-Franceschetti syndrome 1 isoform f... TCOF1 0.784 Treacher Collins-Franceschetti syndrome 1 isoform b ... NOLC1 0.069 nucleolar and coiled-body phosphoprotein 1 NACA 0.058 nascent polypeptide-associated complex alpha subuni... NEFH 0.050 neurofilament, heavy polypeptide 200kDa PRG4 0.049 proteoglycan 4 isoform D PRG4 0.049 proteoglycan 4 isoform C PRG4 0.049 proteoglycan 4 isoform B PRG4 0.049 proteoglycan 4 isoform A PCLO 0.043 piccolo isoform 2 PCLO 0.043 piccolo isoform 1 SRRM2 0.040 splicing coactivator subunit SRm300 RP1L1 0.040 retinitis pigmentosa 1-like 1 GPRIN1 0.038 G protein-regulated inducer of neurite outgrowth 1 ... TAF4 0.038 TBP-associated factor 4 SCAF1 0.037 SR-related CTD-associated factor 1 DSPP 0.035 dentin sialophosphoprotein preproprotein MUC17 0.034 mucin 17 APC2 0.034 adenomatosis polyposis coli 2 KIAA0754 0.034 hypothetical protein LOC643314 COL2A1 0.033 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.033 collagen, type II, alpha 1 isoform 2 precursor [Hom... FNDC1 0.032 fibronectin type III domain containing 1 COL1A1 0.032 alpha 1 type I collagen preproprotein SPEN 0.030 spen homolog, transcriptional regulator COL3A1 0.030 collagen type III alpha 1 preproprotein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.