CKAP5 33258

Name: CKAP5	Sequence: fasta or formatted (2032aa)		NCBI GI: 57164942
Description: colonic and hepatic tumor over-expressed protein isoform a		Referenced in: Cytoskeleton Small RNAs in RNA Processing Spindle, M phase, and Meiosis
Other entries for this name: alt prot [1972aa] colonic and hepatic tumor over-expressed protein isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.0 163 3 C cysteine 1.5 30 1 D aspartate 5.5 111 2 E glutamate 8.4 170 3 F phenylalanine 2.9 59 2 G glycine 5.3 108 3 H histidine 1.7 34 2 I isoleucine 5.8 118 2 K lysine 10.5 213 3 L leucine 10.8 219 2 M methionine 2.9 58 2 N asparagine 4.0 81 2 P proline 5.0 102 2 Q glutamine 4.1 83 3 R arginine 3.6 73 2 S serine 7.1 144 4 T threonine 4.8 98 3 V valine 6.1 124 2 W tryptophan 0.9 18 1 Y tyrosine 1.3 26 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 colonic and hepatic tumor over-expressed protein iso... CKAP5 0.947 colonic and hepatic tumor over-expressed protein iso... CLASP2 0.008 CLIP-associating protein 2 CLASP1 0.007 CLIP-associating protein 1 isoform 3 CLASP1 0.007 CLIP-associating protein 1 isoform 2 CLASP1 0.007 CLIP-associating protein 1 isoform 1 COL4A3 0.005 alpha 3 type IV collagen isoform 5 precursor COL4A3 0.005 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.005 alpha 3 type IV collagen isoform 2 precursor COL4A3 0.005 alpha 3 type IV collagen isoform 1 precursor EMID1 0.004 EMI domain containing 1 COL11A2 0.004 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL11A2 0.004 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL11A2 0.004 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL2A1 0.004 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.004 collagen, type II, alpha 1 isoform 2 precursor [Hom... BRD2 0.004 bromodomain containing 2 BRD2 0.004 bromodomain containing 2 COL1A1 0.004 alpha 1 type I collagen preproprotein COL11A1 0.004 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.004 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.004 alpha 1 type XI collagen isoform A preproprotein [Ho... TCOF1 0.004 Treacher Collins-Franceschetti syndrome 1 isoform f... TCOF1 0.004 Treacher Collins-Franceschetti syndrome 1 isoform e... TCOF1 0.004 Treacher Collins-Franceschetti syndrome 1 isoform d... TCOF1 0.004 Treacher Collins-Franceschetti syndrome 1 isoform b ... TCOF1 0.004 Treacher Collins-Franceschetti syndrome 1 isoform a ... TCOF1 0.004 Treacher Collins-Franceschetti syndrome 1 isoform c ... NEFH 0.004 neurofilament, heavy polypeptide 200kDa BBC3 0.004 BCL2 binding component 3 isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.