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Search of human proteins with 56550035
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56550035 colon carcinoma related protein [Homo sapiens]
(326 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56550035 colon carcinoma related protein [Homo sapiens] 704 0.0
gi|32880231 vestigial-like 2 isoform 1 [Homo sapiens] 154 8e-38
gi|23592242 vestigial-like 2 isoform 2 [Homo sapiens] 98 1e-20
gi|7706741 vestigial like 1 [Homo sapiens] 65 6e-11
gi|61966923 forkhead box B2 [Homo sapiens] 54 2e-07
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 50 2e-06
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 50 3e-06
gi|55770830 chromobox homolog 4 [Homo sapiens] 49 5e-06
gi|20070107 orthodenticle homeobox 1 [Homo sapiens] 49 5e-06
gi|14916427 naked cuticle homolog 2 [Homo sapiens] 49 8e-06
gi|18765752 dual-specificity tyrosine-(Y)-phosphorylation regula... 48 1e-05
gi|18765758 dual-specificity tyrosine-(Y)-phosphorylation regula... 48 1e-05
gi|37595553 ring finger protein 111 [Homo sapiens] 47 2e-05
gi|119220564 one cut domain, family member 2 [Homo sapiens] 47 2e-05
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 47 3e-05
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 47 3e-05
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 47 3e-05
gi|32307177 forkhead box G1 [Homo sapiens] 46 4e-05
gi|4504489 histidine-rich glycoprotein precursor [Homo sapiens] 46 4e-05
gi|151301053 RNA binding motif protein 33 [Homo sapiens] 44 1e-04
gi|118600967 shroom family member 4 [Homo sapiens] 44 2e-04
gi|110578665 seven in absentia homolog 3 [Homo sapiens] 44 2e-04
gi|32698730 nuclear fragile X mental retardation protein interac... 44 3e-04
gi|4507955 YY1 transcription factor [Homo sapiens] 43 4e-04
gi|89886261 histidine rich carboxyl terminus 1 [Homo sapiens] 43 4e-04
gi|197304786 IQ motif and Sec7 domain 1 isoform a [Homo sapiens] 43 4e-04
gi|110347455 Brn3b POU domain transcription factor [Homo sapiens] 43 4e-04
gi|84105335 mesenchyme homeobox 2 [Homo sapiens] 42 6e-04
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 42 7e-04
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 42 7e-04
>gi|56550035 colon carcinoma related protein [Homo sapiens]
Length = 326
Score = 704 bits (1816), Expect = 0.0
Identities = 326/326 (100%), Positives = 326/326 (100%)
Query: 1 MSCAEVMYHPQPYGASQYLPNPMAATTCPTAYYQPAPQPGQQKKLAVFSKMQDSLEVTLP 60
MSCAEVMYHPQPYGASQYLPNPMAATTCPTAYYQPAPQPGQQKKLAVFSKMQDSLEVTLP
Sbjct: 1 MSCAEVMYHPQPYGASQYLPNPMAATTCPTAYYQPAPQPGQQKKLAVFSKMQDSLEVTLP 60
Query: 61 SKQEEEDEEEEEEEKDQPAEMEYLNSRCVLFTYFQGDIGSVVDEHFSRALGQAITLHPES 120
SKQEEEDEEEEEEEKDQPAEMEYLNSRCVLFTYFQGDIGSVVDEHFSRALGQAITLHPES
Sbjct: 61 SKQEEEDEEEEEEEKDQPAEMEYLNSRCVLFTYFQGDIGSVVDEHFSRALGQAITLHPES 120
Query: 121 AISKSKMGLTPLWRDSSALSSQRNSFPTSFWTSSYQPPPAPCLGGVHPDFQVTGPPGTFS 180
AISKSKMGLTPLWRDSSALSSQRNSFPTSFWTSSYQPPPAPCLGGVHPDFQVTGPPGTFS
Sbjct: 121 AISKSKMGLTPLWRDSSALSSQRNSFPTSFWTSSYQPPPAPCLGGVHPDFQVTGPPGTFS 180
Query: 181 AADPSPWPGHNLHQTGPAPPPAVSESWPYPLTSQVSPSYSHMHDVYMRHHHPHAHMHHRH 240
AADPSPWPGHNLHQTGPAPPPAVSESWPYPLTSQVSPSYSHMHDVYMRHHHPHAHMHHRH
Sbjct: 181 AADPSPWPGHNLHQTGPAPPPAVSESWPYPLTSQVSPSYSHMHDVYMRHHHPHAHMHHRH 240
Query: 241 RHHHHHHHPPAGSALDPSYGPLLMPSVHAARIPAPQCDITKTEPTTVTSATSAWAGAFHG 300
RHHHHHHHPPAGSALDPSYGPLLMPSVHAARIPAPQCDITKTEPTTVTSATSAWAGAFHG
Sbjct: 241 RHHHHHHHPPAGSALDPSYGPLLMPSVHAARIPAPQCDITKTEPTTVTSATSAWAGAFHG 300
Query: 301 TVDIVPSVGFDTGLQHQDKSKESPWY 326
TVDIVPSVGFDTGLQHQDKSKESPWY
Sbjct: 301 TVDIVPSVGFDTGLQHQDKSKESPWY 326
>gi|32880231 vestigial-like 2 isoform 1 [Homo sapiens]
Length = 317
Score = 154 bits (390), Expect = 8e-38
Identities = 133/348 (38%), Positives = 153/348 (43%), Gaps = 118/348 (33%)
Query: 1 MSCAEVMYH----PQPYGASQYLPNPMAATTCPTAYYQPAPQPGQQKKLAVFSKMQDSLE 56
MSC +VMY PQPY A+ Y P Y+Q KLA +SKMQ++ E
Sbjct: 1 MSCLDVMYQVYGPPQPYFAAAYTP-----------YHQ---------KLAYYSKMQEAQE 40
Query: 57 VTL-PSKQEEED------------EEEEEEEKDQPAEMEYLNSRCVLFTYFQGDIGSVVD 103
PS EEE EK++P E EY+NSRCVLFTYFQGDI SVVD
Sbjct: 41 CNASPSSSGSGSSSFSSQTPASIKEEEGSPEKERPPEAEYINSRCVLFTYFQGDISSVVD 100
Query: 104 EHFSRALGQAITLHPESAISKSKMGLTPLWRDSSALSSQRNSFPTSFWTSSYQPPPAPCL 163
EHFSRAL Q + P SK+ P WRD S SQR SFP SFW S+YQ P P L
Sbjct: 101 EHFSRALSQPSSYSPSCTSSKAPRSSGP-WRDCSFPMSQR-SFPASFWNSAYQAPVPPPL 158
Query: 164 GGVHPDFQVTGPPGTFSAADP-SPWPGH-NLHQTGPAPPPAVSESWPYPLTSQVSPSYSH 221
G P F+AADP SP H +LHQ +E W
Sbjct: 159 GSPLATAHSELP---FAAADPYSPAALHGHLHQ-------GATEPW-------------- 194
Query: 222 MHDVYMRHHHPHAHMHHRHRHHHHHHHPPA-GSAL---------------------DPSY 259
HH H HH H HHP A G AL DP Y
Sbjct: 195 ---------------HHAHPHHAHPHHPYALGGALGAQAAPYPRPAAVHEVYAPHFDPRY 239
Query: 260 GPLLMPS-----VHAARIPA-----PQCDIT-KTEPTTVTSATSAWAG 296
GPLLMP+ A PA P C+++ K EP A +AWAG
Sbjct: 240 GPLLMPAASGRPARLATAPAPAPGSPPCELSGKGEP-----AGAAWAG 282
>gi|23592242 vestigial-like 2 isoform 2 [Homo sapiens]
Length = 143
Score = 97.8 bits (242), Expect = 1e-20
Identities = 66/151 (43%), Positives = 77/151 (50%), Gaps = 38/151 (25%)
Query: 1 MSCAEVMYH----PQPYGASQYLPNPMAATTCPTAYYQPAPQPGQQKKLAVFSKMQDSLE 56
MSC +VMY PQPY A+ Y P Y+Q KLA +SKMQ++ E
Sbjct: 1 MSCLDVMYQVYGPPQPYFAAAYTP-----------YHQ---------KLAYYSKMQEAQE 40
Query: 57 VTL-PSKQEEED------------EEEEEEEKDQPAEMEYLNSRCVLFTYFQGDIGSVVD 103
PS EEE EK++P E EY+NSRCVLFTYFQGDI SVVD
Sbjct: 41 CNASPSSSGSGSSSFSSQTPASIKEEEGSPEKERPPEAEYINSRCVLFTYFQGDISSVVD 100
Query: 104 EHFSRALGQAITLHPESAISKSKMGLTPLWR 134
EHFSRAL Q + P SK+ P WR
Sbjct: 101 EHFSRALSQPSSYSPSCTSSKAPRSSGP-WR 130
>gi|7706741 vestigial like 1 [Homo sapiens]
Length = 258
Score = 65.5 bits (158), Expect = 6e-11
Identities = 54/154 (35%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 75 KDQPAEMEYLNSRCVLFTYFQGDIGSVVDEHFSRALGQAITLHPESAISKSKMGLTPLWR 134
K +P + E+ NSRCVLFTYFQGDI SVVDEHFSRAL KS LTP +
Sbjct: 15 KQKPIKTEW-NSRCVLFTYFQGDISSVVDEHFSRALSNI----------KSPQELTPSSQ 63
Query: 135 DSSALSSQRNSFPTSFWTSSYQPPPAPCLGGVHPDFQVTGPPGTFSAADPSPWPGHNLHQ 194
+ +S + W S P P P+ VT + P P ++Q
Sbjct: 64 SEGVMLKNDDSMSPNQWRYS-SPWTKP-----QPEVPVTNRAANCNLHVPGPMA---VNQ 114
Query: 195 TGPAPPPAVS----ESWPYPL---TSQVSPSYSH 221
P+ S E W + TS + P YSH
Sbjct: 115 FSPSLARRASVRPGELWHFSSLAGTSSLEPGYSH 148
>gi|61966923 forkhead box B2 [Homo sapiens]
Length = 432
Score = 53.5 bits (127), Expect = 2e-07
Identities = 25/57 (43%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 221 HMHDVYMRHHHPHAHMHHRHR-HHHHHHHPPAGSALDPSYGPLLMPSVHAARIPAPQ 276
H+H + HHHPH H HH HHHHHHHPP P P ++ H APQ
Sbjct: 135 HLHPHH--HHHPHHHHHHHAAAHHHHHHHPPQPPPPPPPPPPHMVHYFHQQPPTAPQ 189
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 50.4 bits (119), Expect = 2e-06
Identities = 30/76 (39%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 202 AVSESWPY-PLTSQVSPSYSHMHDVYMRHHHPHAHMHHRHRHHHHHHHPPAGSALDPSYG 260
A S S P+ P +PS H+ M HHH H H H HHHHHHHP + PS
Sbjct: 2186 ATSASLPFMPFVMGGAPSSPHVDSSTMLHHHHH----HPHPHHHHHHHPGLRAPGYPS-S 2240
Query: 261 PLLMPSVHAARIPAPQ 276
P+ S R+P Q
Sbjct: 2241 PVTTASGTTLRLPPLQ 2256
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 50.1 bits (118), Expect = 3e-06
Identities = 56/237 (23%), Positives = 80/237 (33%), Gaps = 14/237 (5%)
Query: 34 QPAPQPGQQKKLAVFSKMQDSLEVTLPSKQEEEDEEEEEEEKDQPAEMEYLNSRCVLFTY 93
QPAP P +KK V+ + L+ L + Q+ E P + L +
Sbjct: 801 QPAPVPSMEKKRTVYQMALNKLDEILAAAQQTISASESPG----PGGLASLGKHRPK-GF 855
Query: 94 FQGDIGSVVDEHFSRALGQAITLHPESAISKSKMGLTPLWRDSSALSSQRNSFPTSFWT- 152
F + + + L P + + + D L+ F S
Sbjct: 856 FATESSFDPHHRAQPSYERPSFLPPGPGLMLRQKSIGAAEDDRPYLAPPAMKFSRSLSVP 915
Query: 153 SSYQPPPAPCLGGVHPDFQVTGPPGTFSAADPSPWPG-HNLHQTGPAPPPA-VSESWPYP 210
S PP P P + P + PSP G N GP P + S P P
Sbjct: 916 GSEDIPPPPTTSPPEPPYSTPPVPSSSGRLTPSPRGGPFNPGSGGPLPASSPASFDGPSP 975
Query: 211 LTSQVSP---SYSHMHDVYMRHHHPHAHMHHRH---RHHHHHHHPPAGSALDPSYGP 261
++V S H + HHHP H HH + HHHH HPP ++ P
Sbjct: 976 PDTRVGSREKSLYHSGPLPPAHHHPPHHHHHHAPPPQPHHHHAHPPHPPEMETGGSP 1032
>gi|55770830 chromobox homolog 4 [Homo sapiens]
Length = 560
Score = 49.3 bits (116), Expect = 5e-06
Identities = 15/19 (78%), Positives = 15/19 (78%)
Query: 230 HHPHAHMHHRHRHHHHHHH 248
HHPH H HH H HHHHHHH
Sbjct: 382 HHPHPHPHHHHHHHHHHHH 400
Score = 42.4 bits (98), Expect = 6e-04
Identities = 13/18 (72%), Positives = 13/18 (72%)
Query: 229 HHHPHAHMHHRHRHHHHH 246
H HPH H HH H HHHHH
Sbjct: 383 HPHPHPHHHHHHHHHHHH 400
Score = 39.3 bits (90), Expect = 0.005
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 228 RHHHPHAHMHHRHRHHHHHHH 248
R+ HP +H H H HHHHHHH
Sbjct: 375 RNTHPPSHHPHPHPHHHHHHH 395
>gi|20070107 orthodenticle homeobox 1 [Homo sapiens]
Length = 354
Score = 49.3 bits (116), Expect = 5e-06
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 17/74 (22%)
Query: 199 PPPAVSESWPYPLTSQVSPSYSHMHDVYM-----------RHHHPHAH------MHHRHR 241
P P+ S +S ++P +SH H + HHHPHAH H H
Sbjct: 236 PTPSSSYFGGVDCSSYLAPMHSHHHPHQLSPMAPSSMAGHHHHHPHAHHPLSQSSGHHHH 295
Query: 242 HHHHHHHPPAGSAL 255
HHHHHH GS L
Sbjct: 296 HHHHHHQGYGGSGL 309
>gi|14916427 naked cuticle homolog 2 [Homo sapiens]
Length = 451
Score = 48.5 bits (114), Expect = 8e-06
Identities = 31/95 (32%), Positives = 35/95 (36%), Gaps = 19/95 (20%)
Query: 156 QPPPAPCLGGVHPDFQVTGPPGTFSAADPSPWPGHNLHQT-GPAPPPAVSESWPYPLTSQ 214
QPPP P H ++ G G P P H+ PP E + P
Sbjct: 374 QPPPPPY---GHKRYRQKGREGHSPLKAPHAQPATVEHEVVRDLPPTPAGEGYAVP---- 426
Query: 215 VSPSYSHMHDVYMRHHHPHAHMHHRHRHHHHHHHP 249
V RH H H H HH H HHHHH HP
Sbjct: 427 ----------VIQRHEHHHHHEHHHH-HHHHHFHP 450
>gi|18765752 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 1A isoform 2 [Homo sapiens]
Length = 754
Score = 47.8 bits (112), Expect = 1e-05
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 198 APPPAVSESWPYPLTS-QVSPSYSHMHDVYMRHHHPHAHMHHRHRHHHHHHH 248
AP E+ P T+ V+P + +H HHH ++ HH H HHHHHHH
Sbjct: 564 APTQVTVETHPVQETTFHVAPQQNALH-----HHHGNSSHHHHHHHHHHHHH 610
Score = 42.4 bits (98), Expect = 6e-04
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 14/69 (20%)
Query: 201 PAVSESWPYPL--------------TSQVSPSYSHMHDVYMRHHHPHAHMHHRHRHHHHH 246
P V + +P PL T V + H+ HH H + H H HHHHH
Sbjct: 547 PQVRQQFPAPLGWSGTEAPTQVTVETHPVQETTFHVAPQQNALHHHHGNSSHHHHHHHHH 606
Query: 247 HHPPAGSAL 255
HH AL
Sbjct: 607 HHHHGQQAL 615
Score = 33.9 bits (76), Expect = 0.20
Identities = 17/57 (29%), Positives = 23/57 (40%)
Query: 192 LHQTGPAPPPAVSESWPYPLTSQVSPSYSHMHDVYMRHHHPHAHMHHRHRHHHHHHH 248
+ Q PAP P +T + P V + + H H + HHHHHHH
Sbjct: 549 VRQQFPAPLGWSGTEAPTQVTVETHPVQETTFHVAPQQNALHHHHGNSSHHHHHHHH 605
>gi|18765758 dual-specificity tyrosine-(Y)-phosphorylation regulated
kinase 1A isoform 1 [Homo sapiens]
Length = 763
Score = 47.8 bits (112), Expect = 1e-05
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 198 APPPAVSESWPYPLTS-QVSPSYSHMHDVYMRHHHPHAHMHHRHRHHHHHHH 248
AP E+ P T+ V+P + +H HHH ++ HH H HHHHHHH
Sbjct: 573 APTQVTVETHPVQETTFHVAPQQNALH-----HHHGNSSHHHHHHHHHHHHH 619
Score = 42.4 bits (98), Expect = 6e-04
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 14/69 (20%)
Query: 201 PAVSESWPYPL--------------TSQVSPSYSHMHDVYMRHHHPHAHMHHRHRHHHHH 246
P V + +P PL T V + H+ HH H + H H HHHHH
Sbjct: 556 PQVRQQFPAPLGWSGTEAPTQVTVETHPVQETTFHVAPQQNALHHHHGNSSHHHHHHHHH 615
Query: 247 HHPPAGSAL 255
HH AL
Sbjct: 616 HHHHGQQAL 624
Score = 33.9 bits (76), Expect = 0.20
Identities = 17/57 (29%), Positives = 23/57 (40%)
Query: 192 LHQTGPAPPPAVSESWPYPLTSQVSPSYSHMHDVYMRHHHPHAHMHHRHRHHHHHHH 248
+ Q PAP P +T + P V + + H H + HHHHHHH
Sbjct: 558 VRQQFPAPLGWSGTEAPTQVTVETHPVQETTFHVAPQQNALHHHHGNSSHHHHHHHH 614
>gi|37595553 ring finger protein 111 [Homo sapiens]
Length = 986
Score = 47.4 bits (111), Expect = 2e-05
Identities = 34/121 (28%), Positives = 46/121 (38%), Gaps = 23/121 (19%)
Query: 202 AVSESWP--YPLTSQVSPSYSHMHDVYMRHH---HPHA-----HMHHRHRHHHHHHHPPA 251
AV+E+ P P P +S HH HPH H HH HHHHHH P
Sbjct: 465 AVTETGPPAMPRLPSCCPQHSPCGGSSQNHHALGHPHTSCFQQHGHHFQHHHHHHHTPHP 524
Query: 252 GSALDPSYGPLLMPSVHAARIPAPQCDITKTEPTTV------------TSATSAWAGAFH 299
+ PS+ P ++ AP C + T+ + S +G+FH
Sbjct: 525 AVPVSPSFSDPACPVERPPQVQAP-CGANSSSGTSYHEQQALPVDLSNSGIRSHGSGSFH 583
Query: 300 G 300
G
Sbjct: 584 G 584
Score = 37.0 bits (84), Expect = 0.024
Identities = 30/104 (28%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 167 HPDFQVTGPPGTFSAADPSPWPGH--NLHQTG----PAPPPAVSESWPYPLTSQVSPSYS 220
HP V PP T A+ +P P H HQ PA P P+ + ++
Sbjct: 703 HP---VAPPPPTHLASTAAPIPQHLPPTHQPISHHIPATAPPAQRLHPHEVMQRMEVQRR 759
Query: 221 HMHDVYMRHHH---PHAHMHHRHRHHHHHHHPPAGSALDPSYGP 261
M R H PH H H + H HH H P + P P
Sbjct: 760 RMMQHPTRAHERPPPHPHRMHPNYGHGHHIHVPQTMSSHPRQAP 803
>gi|119220564 one cut domain, family member 2 [Homo sapiens]
Length = 504
Score = 47.0 bits (110), Expect = 2e-05
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 190 HNLHQTGPAPPPAVSESWPYPLTSQVSPSYSHMHDVYMRHHHPHAHMHHRHRHHHHHHHP 249
H + + + PP + S Y + + P + V + HHPH H HH H HHHHHH
Sbjct: 129 HAMSMSCDSSPPGMGMSNTYTTLTPLQP-LPPISTVSDKFHHPHPH-HHPHHHHHHHHQR 186
Query: 250 PAGS 253
+G+
Sbjct: 187 LSGN 190
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 46.6 bits (109), Expect = 3e-05
Identities = 23/61 (37%), Positives = 23/61 (37%), Gaps = 21/61 (34%)
Query: 188 PGHNLHQTGPAPPPAVSESWPYPLTSQVSPSYSHMHDVYMRHHHPHAHMHHRHRHHHHHH 247
P H L G AP P H HHH HAH HH H HH HHH
Sbjct: 7 PNHKLKTVGEAPA--------------APPHQQH-------HHHHHAHHHHHHAHHLHHH 45
Query: 248 H 248
H
Sbjct: 46 H 46
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 46.6 bits (109), Expect = 3e-05
Identities = 23/61 (37%), Positives = 23/61 (37%), Gaps = 21/61 (34%)
Query: 188 PGHNLHQTGPAPPPAVSESWPYPLTSQVSPSYSHMHDVYMRHHHPHAHMHHRHRHHHHHH 247
P H L G AP P H HHH HAH HH H HH HHH
Sbjct: 7 PNHKLKTVGEAPA--------------APPHQQH-------HHHHHAHHHHHHAHHLHHH 45
Query: 248 H 248
H
Sbjct: 46 H 46
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 46.6 bits (109), Expect = 3e-05
Identities = 23/61 (37%), Positives = 23/61 (37%), Gaps = 21/61 (34%)
Query: 188 PGHNLHQTGPAPPPAVSESWPYPLTSQVSPSYSHMHDVYMRHHHPHAHMHHRHRHHHHHH 247
P H L G AP P H HHH HAH HH H HH HHH
Sbjct: 7 PNHKLKTVGEAPA--------------APPHQQH-------HHHHHAHHHHHHAHHLHHH 45
Query: 248 H 248
H
Sbjct: 46 H 46
>gi|32307177 forkhead box G1 [Homo sapiens]
Length = 489
Score = 46.2 bits (108), Expect = 4e-05
Identities = 23/62 (37%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 223 HDVYMRHHHPHAHMHHRHRHHHHHHHPPAGSALDPSYGPLLMPSVHAARIPAPQCDITKT 282
H HH+ H HH H HHHHHH PP P P PAPQ T+
Sbjct: 33 HHASHGHHNSHHPQHHHHHHHHHHHPPPPAPQPPP---PPQQQQPPPPPPPAPQPPQTRG 89
Query: 283 EP 284
P
Sbjct: 90 AP 91
>gi|4504489 histidine-rich glycoprotein precursor [Homo sapiens]
Length = 525
Score = 46.2 bits (108), Expect = 4e-05
Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 219 YSHMHDVYMRH---HHPHAHM---HHRHRHHHHHHHPPAGSALDPSYGP 261
+ H HD + +H HHPH H HH H HH H HHP D YGP
Sbjct: 370 HPHEHDTHRQHPHGHHPHGHHPHGHHPHGHHPHGHHPHCHDFQD--YGP 416
Score = 44.7 bits (104), Expect = 1e-04
Identities = 34/122 (27%), Positives = 41/122 (33%), Gaps = 38/122 (31%)
Query: 165 GVHPDFQVTGPPGTFSAADPSPWPGHNLHQTGPAPPPAVSE--------SWPYPL----- 211
G H T PP + P H H+ GP PPP + P PL
Sbjct: 266 GGHERSSTTKPPFKPHGSRDHHHP-HKPHEHGPPPPPDERDHSHGPPLPQGPPPLLPMSC 324
Query: 212 ---------------------TSQVSPSYSHMHDVYMRHHHPHAH---MHHRHRHHHHHH 247
+S + P H H+ + HHPHAH H HR H H H
Sbjct: 325 SSCQHATFGTNGAQRHSHNNNSSDLHPHKHHSHEQHPHGHHPHAHHPHEHDTHRQHPHGH 384
Query: 248 HP 249
HP
Sbjct: 385 HP 386
Score = 39.3 bits (90), Expect = 0.005
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 217 PSYSHMHDVYMRHHHPHAHM---HHRHRHHHHHHHP 249
P H H+ HPH H HH H HH H HHP
Sbjct: 366 PHAHHPHEHDTHRQHPHGHHPHGHHPHGHHPHGHHP 401
Score = 34.3 bits (77), Expect = 0.15
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 212 TSQVSPSYSHMHDVYMRHHHPHAHMHHRHRHHHHHH 247
T + P H H + HHPH H H H HH H H
Sbjct: 376 THRQHPHGHHPHGHHPHGHHPHGH--HPHGHHPHCH 409
Score = 29.3 bits (64), Expect = 5.0
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 232 PHAHMHHRHRH-HHHHHHPPAGSALDPSYGPLL 263
PH H H H H H PP D S+GP L
Sbjct: 280 PHGSRDHHHPHKPHEHGPPPPPDERDHSHGPPL 312
>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
Length = 1170
Score = 44.3 bits (103), Expect = 1e-04
Identities = 42/160 (26%), Positives = 48/160 (30%), Gaps = 39/160 (24%)
Query: 156 QPPPAPCLGGVHPDFQVTGPPGTFSAADPS---------------PWPGHNLHQT----- 195
Q P P V P Q GP G + P P PG T
Sbjct: 518 QQPVFPRERPVRPALQPPGPVGILHFSQPGSATTRPFIPPRQPFLPGPGQPFLPTHTQPN 577
Query: 196 --GPAPPPAVSESWPYPLTSQVSPSYSHM------HDVYMRHH----HPHAHMHHRHRHH 243
GP PP P P Q P H H +H HP H HH
Sbjct: 578 LQGPLHPPLPPPHQPQPQQPQQQPPPQHQPPHQPPHQPPPQHQPPPQHPPQHPPQHQHHH 637
Query: 244 HHHH----HPPAGSALDPSYGP---LLMPSVHAARIPAPQ 276
HHHH PP P + P P ++R+ PQ
Sbjct: 638 HHHHLSVPPPPLMPMSQPQFRPHVQTAQPQASSSRMQCPQ 677
>gi|118600967 shroom family member 4 [Homo sapiens]
Length = 1493
Score = 43.9 bits (102), Expect = 2e-04
Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 34/182 (18%)
Query: 31 AYYQPAPQPGQQKKLAVFSKMQDSLEVTLPSKQEEEDEEEEEEEKDQPAEMEYLNSRCVL 90
A+ P P P +K +F Q + KQ+EE+EEEEEEE+++ E E
Sbjct: 1098 AFPPPRPPPPNWEKYRLFRAAQQQKQQQQQQKQQEEEEEEEEEEEEEEEEEE-------- 1149
Query: 91 FTYFQGDIGSVVDEHFSRALGQAITLHPESAISK----SKMGLTPLWRDSSALSSQRNSF 146
+ + + ++FS + L+PE + + S L + S ++ +++ SF
Sbjct: 1150 -EEAEEEEEELPPQYFSSETSGSCALNPEEVLEQPQPLSFGHLEGSRQGSQSVPAEQESF 1208
Query: 147 PTSFWTSSYQPP------------PAPCLGGVHPDFQVTGPPGTFSA-------ADPSPW 187
+ +S + PP PC G+ ++ +G T SA + PS
Sbjct: 1209 --ALHSSDFLPPIRGHLGSQPEQAQPPCYYGIGGLWRTSGQEATESAKQEFQHFSPPSGA 1266
Query: 188 PG 189
PG
Sbjct: 1267 PG 1268
>gi|110578665 seven in absentia homolog 3 [Homo sapiens]
Length = 269
Score = 43.9 bits (102), Expect = 2e-04
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 213 SQVSPSYSHMHDVYMRHHHPHAHMHHRHRHH---HHHHHPPAGSALDP 257
+Q +P H ++ HHH H HH RHH HH HH AG +P
Sbjct: 54 TQSAPEQGSFHPHHLSHHHCHHRHHHHLRHHAHPHHLHHQEAGLHANP 101
>gi|32698730 nuclear fragile X mental retardation protein
interacting protein 2 [Homo sapiens]
Length = 695
Score = 43.5 bits (101), Expect = 3e-04
Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 12/44 (27%)
Query: 217 PSYSHMHDVYMRHHHP-------HAHMH-----HRHRHHHHHHH 248
P H H + HHHP H H H H H HHHHHHH
Sbjct: 8 PQPQHHHSHHHPHHHPQQQQQQPHHHHHYYFYNHSHNHHHHHHH 51
Score = 35.0 bits (79), Expect = 0.091
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 209 YPLTSQVSPSYSHMHDVYMRHHHPHAHMHHRHRHHHHHHHPPAGS 253
+P Q P + H H + H H H H HH + H + H GS
Sbjct: 22 HPQQQQQQPHHHH-HYYFYNHSHNHHHHHHHQQPHQYLQHGAEGS 65
>gi|4507955 YY1 transcription factor [Homo sapiens]
Length = 414
Score = 42.7 bits (99), Expect = 4e-04
Identities = 13/18 (72%), Positives = 13/18 (72%)
Query: 233 HAHMHHRHRHHHHHHHPP 250
H H H H HHHHHHHPP
Sbjct: 65 HGHAGHHHHHHHHHHHPP 82
Score = 35.4 bits (80), Expect = 0.069
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 231 HPHAHMHHRHRHHHHHHHPPAGSALDP 257
H HA HH H HHHHH P AL P
Sbjct: 65 HGHAGHHHHHHHHHHH---PPMIALQP 88
>gi|89886261 histidine rich carboxyl terminus 1 [Homo sapiens]
Length = 115
Score = 42.7 bits (99), Expect = 4e-04
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 204 SESWPYPLTSQVSPSYSHMHDVYM---------RHHHPHAHMHHRHRHHH-HHHHP 249
++ WP+ + + H H ++ HHHP HH H HHH H HHP
Sbjct: 56 AQPWPFRRRGHLGIFHHHRHPGHVSHVPNVGLHHHHHPRHTPHHLHHHHHPHRHHP 111
Score = 36.6 bits (83), Expect = 0.031
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 220 SHMHDVYMRHHH-----PHAHMHHRHRHHHHHHH 248
SH+ +V + HHH PH HH H H HH H
Sbjct: 80 SHVPNVGLHHHHHPRHTPHHLHHHHHPHRHHPRH 113
>gi|197304786 IQ motif and Sec7 domain 1 isoform a [Homo sapiens]
Length = 1114
Score = 42.7 bits (99), Expect = 4e-04
Identities = 38/112 (33%), Positives = 43/112 (38%), Gaps = 16/112 (14%)
Query: 158 PPAPCLGGVHPDFQVTGPPGTFSAADPSPWPGHNLHQTGPAPPPAVSESWPYPLTSQVSP 217
P AP L HP V P S A GH+L P A+ Q P
Sbjct: 987 PSAPALPPPHPP--VVLPHLQHSVA------GHHLGPPEGLPQAAMHGHHTQYCHMQNPP 1038
Query: 218 SYSHMHDVYMRHHHPHAHMHHRHR-HHHHHHHPPAGSALDPSYGPLLMPSVH 268
Y H H HHHP H+ H H+ HH H PA A + PL PS H
Sbjct: 1039 PYHHHH-----HHHPPQHIQHAHQYHHGPHGGHPAYGAHAHGHPPL--PSAH 1083
Score = 32.3 bits (72), Expect = 0.59
Identities = 34/109 (31%), Positives = 38/109 (34%), Gaps = 19/109 (17%)
Query: 157 PPPAPCLGGVHPDFQVTG-----PPGTFSAADPSPWPGHNL---HQTGPAPPPAVSESWP 208
PPP P + H V G P G AA GH+ H P P P
Sbjct: 993 PPPHPPVVLPHLQHSVAGHHLGPPEGLPQAA----MHGHHTQYCHMQNPPPYHHHHHHHP 1048
Query: 209 YPLTSQVSPSYSHM----HDVYMRHHHPHAHMHHRHRHH--HHHHHPPA 251
P Q + Y H H Y H H H + H H HHH PPA
Sbjct: 1049 -PQHIQHAHQYHHGPHGGHPAYGAHAHGHPPLPSAHVGHTVHHHGQPPA 1096
>gi|110347455 Brn3b POU domain transcription factor [Homo sapiens]
Length = 409
Score = 42.7 bits (99), Expect = 4e-04
Identities = 38/129 (29%), Positives = 50/129 (38%), Gaps = 12/129 (9%)
Query: 158 PPAPCLGGVHPDFQVTGPPGTFSAAD-PSPWPGHNLHQTGPAP--PPAVSESW-PYPLTS 213
PP+ GG+ D + +A D S H+ H +P P A + P TS
Sbjct: 95 PPSNIFGGL--DESLLARAEALAAVDIVSQSKSHHHHPPHHSPFKPDATYHTMNTIPCTS 152
Query: 214 QVSPSYSHMHDVYMRHHHPHAHMHHRHRHHHHHHHPPAGSALDPSYGPLLMPSVHAARIP 273
S S V + H A HH H HHHHHHH P AL+ L P + +
Sbjct: 153 AASSS-----SVPISHPSALAGTHHHHHHHHHHHHQP-HQALEGELLEHLSPGLALGAMA 206
Query: 274 APQCDITKT 282
P + T
Sbjct: 207 GPDGAVVST 215
>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
Length = 304
Score = 42.4 bits (98), Expect = 6e-04
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 204 SESWPYPLTSQVSPS-----YSHMHDVYMRHHHPHAHMHHRHRHHHHHHHPPAGSALDPS 258
S+ YP S S S Y + ++ HH H HH H HHHHHH AL +
Sbjct: 33 SDHMSYPELSTSSSSCIIAGYPNEEGMFASQHH-RGHHHHHHHHHHHHHQQQQHQALQTN 91
Query: 259 Y 259
+
Sbjct: 92 W 92
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 42.0 bits (97), Expect = 7e-04
Identities = 13/18 (72%), Positives = 13/18 (72%)
Query: 233 HAHMHHRHRHHHHHHHPP 250
H H HH HHHHHHHPP
Sbjct: 653 HPHHHHHPHHHHHHHHPP 670
Score = 41.2 bits (95), Expect = 0.001
Identities = 16/25 (64%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 231 HPHAHMHHRHRHHHHHHHPPAGSAL 255
HPH H HH H HHHHHH P S L
Sbjct: 653 HPHHH-HHPHHHHHHHHPPQPPSPL 676
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 42.0 bits (97), Expect = 7e-04
Identities = 13/18 (72%), Positives = 13/18 (72%)
Query: 233 HAHMHHRHRHHHHHHHPP 250
H H HH HHHHHHHPP
Sbjct: 653 HPHHHHHPHHHHHHHHPP 670
Score = 41.2 bits (95), Expect = 0.001
Identities = 16/25 (64%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 231 HPHAHMHHRHRHHHHHHHPPAGSAL 255
HPH H HH H HHHHHH P S L
Sbjct: 653 HPHHH-HHPHHHHHHHHPPQPPSPL 676
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,258,762
Number of Sequences: 37866
Number of extensions: 1042390
Number of successful extensions: 17490
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 311
Number of HSP's that attempted gapping in prelim test: 9458
Number of HSP's gapped (non-prelim): 4439
length of query: 326
length of database: 18,247,518
effective HSP length: 103
effective length of query: 223
effective length of database: 14,347,320
effective search space: 3199452360
effective search space used: 3199452360
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.