Guide to the Human Genome
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Name: HRCT1 Sequence: fasta or formatted (115aa) NCBI GI: 89886261
Description:

histidine rich carboxyl terminus 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8          9           2
 C cysteine            1.7          2           1
 D aspartate           1.7          2           1
 E glutamate           0.9          1           1
 F phenylalanine       2.6          3           1
 G glycine             9.6         11           2
 H histidine          21.7         25           5
 I isoleucine          1.7          2           1
 K lysine              0.0          0           0
 L leucine            13.0         15           7
 M methionine          0.9          1           1
 N asparagine          2.6          3           1
 P proline             7.0          8           1
 Q glutamine           1.7          2           1
 R arginine           12.2         14           3
 S serine              1.7          2           1
 T threonine           4.3          5           1
 V valine              7.0          8           1
 W tryptophan          1.7          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   histidine rich carboxyl terminus 1 
FOXB2                 0.105   forkhead box B2 
NLK                   0.101   nemo like kinase 
OTX1                  0.093   orthodenticle homeobox 1 
HRG                   0.089   histidine-rich glycoprotein precursor 
IQSEC1                0.084   IQ motif and Sec7 domain 1 isoform a 
NUFIP2                0.084   nuclear fragile X mental retardation protein interac...
FOXG1                 0.084   forkhead box G1 
SIAH3                 0.084   seven in absentia homolog 3 
POU3F3                0.084   POU class 3 homeobox 3 
DYRK1A                0.080   dual-specificity tyrosine-(Y)-phosphorylation regula...
DYRK1A                0.080   dual-specificity tyrosine-(Y)-phosphorylation regula...
SLC39A6               0.080   solute carrier family 39 (zinc transporter), member...
SLC39A6               0.080   solute carrier family 39 (zinc transporter), member...
MAFA                  0.080   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
CREB5                 0.076   cAMP responsive element binding protein 5 isoform de...
CREB5                 0.076   cAMP responsive element binding protein 5 isoform be...
CREB5                 0.076   cAMP responsive element binding protein 5 isoform ga...
CREB5                 0.076   cAMP responsive element binding protein 5 isoform al...
ARID1B                0.076   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.076   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.076   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
VGLL3                 0.076   colon carcinoma related protein 
C10orf140             0.072   hypothetical protein LOC387640 
NKD2                  0.072   naked cuticle homolog 2 
CBX4                  0.068   chromobox homolog 4 
ONECUT2               0.068   one cut domain, family member 2 
GSX2                  0.068   GS homeobox 2 
DLGAP3                0.063   discs, large (Drosophila) homolog-associated protei...
CHD8                  0.063   chromodomain helicase DNA binding protein 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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