Guide to the Human Genome
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Name: POU4F2 Sequence: fasta or formatted (409aa) NCBI GI: 110347455
Description:

Brn3b POU domain transcription factor

Referenced in:

POU Domain

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7         48           2
 C cysteine            1.2          5           1
 D aspartate           2.4         10           1
 E glutamate           4.9         20           2
 F phenylalanine       2.2          9           1
 G glycine             9.5         39          15
 H histidine           8.1         33          12
 I isoleucine          3.7         15           1
 K lysine              5.4         22           2
 L leucine             7.8         32           2
 M methionine          3.9         16           4
 N asparagine          2.7         11           2
 P proline             7.3         30           2
 Q glutamine           3.2         13           1
 R arginine            4.2         17           2
 S serine             13.7         56           7
 T threonine           3.4         14           1
 V valine              3.2         13           2
 W tryptophan          0.5          2           1
 Y tyrosine            1.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Brn3b POU domain transcription factor 
POU4F3                0.528   POU class 4 homeobox 3 
POU4F1                0.367   POU domain, class 4, transcription factor 1 
POU3F2                0.202   POU domain, class 3, transcription factor 2 
POU3F3                0.190   POU class 3 homeobox 3 
POU3F1                0.178   POU domain, class 3, transcription factor 1 
POU3F4                0.156   POU domain, class 3, transcription factor 4 
POU2F3                0.149   POU transcription factor 
POU1F1                0.136   pituitary specific transcription factor 1 isoform b...
POU1F1                0.136   pituitary specific transcription factor 1 isoform alp...
POU2F1                0.133   POU class 2 homeobox 1 
POU2F2                0.131   POU domain, class 2, transcription factor 2 
POU5F1                0.129   POU domain, class 5, transcription factor 1 isoform...
POU5F1                0.129   POU domain, class 5, transcription factor 1 isoform ...
POU5F1B               0.123   POU class 5 homeobox 1B 
POU6F1                0.109   POU class 6 homeobox 1 
POU5F2                0.093   POU domain class 5, transcription factor 2 
POU6F2                0.090   POU domain, class 6, transcription factor 2 
ONECUT2               0.071   one cut domain, family member 2 
MAFA                  0.062   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
MEOX2                 0.046   mesenchyme homeobox 2 
OTX1                  0.046   orthodenticle homeobox 1 
ZNF281                0.043   zinc finger protein 281 
FUSSEL18              0.042   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.042   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.042   PREDICTED: functional smad suppressing element 18 [...
SOX4                  0.042   SRY (sex determining region Y)-box 4 
RFX1                  0.040   regulatory factor X1 
FUS                   0.040   fusion (involved in t(12;16) in malignant liposarcoma...
YEATS2                0.040   YEATS domain containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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