OTX1 11791

Name: OTX1	Sequence: fasta or formatted (354aa)		NCBI GI: 20070107
Description: orthodenticle homeobox 1		Referenced in: Homeobox and Related Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 13.3 47 6 C cysteine 1.4 5 1 D aspartate 2.5 9 1 E glutamate 2.5 9 2 F phenylalanine 2.5 9 1 G glycine 7.9 28 2 H histidine 6.8 24 10 I isoleucine 1.1 4 1 K lysine 3.7 13 3 L leucine 5.9 21 2 M methionine 2.8 10 2 N asparagine 2.5 9 1 P proline 9.0 32 2 Q glutamine 4.8 17 4 R arginine 4.2 15 2 S serine 17.2 61 5 T threonine 3.1 11 2 V valine 3.7 13 1 W tryptophan 1.1 4 1 Y tyrosine 3.7 13 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 orthodenticle homeobox 1 OTX2 0.438 orthodenticle homeobox 2 isoform b OTX2 0.428 orthodenticle homeobox 2 isoform a CRX 0.282 cone-rod homeobox protein PHOX2B 0.129 paired-like homeobox 2b PITX3 0.111 paired-like homeodomain 3 PHOX2A 0.111 paired-like homeobox 2a DRGX 0.111 dorsal root ganglia homeobox ARX 0.109 aristaless related homeobox DMBX1 0.109 diencephalon/mesencephalon homeobox 1 isoform b [Hom... DMBX1 0.109 diencephalon/mesencephalon homeobox 1 isoform a [Hom... OTP 0.108 PREDICTED: orthopedia homeobox OTP 0.108 orthopedia homeobox RAX 0.101 retina and anterior neural fold homeobox PITX1 0.096 paired-like homeodomain transcription factor 1 [Hom... PRRX2 0.095 paired related homeobox 2 RAX2 0.091 retina and anterior neural fold homeobox 2 ALX3 0.089 aristaless-like homeobox 3 ALX4 0.089 aristaless-like homeobox 4 UNCX 0.089 UNC homeobox PITX2 0.088 paired-like homeodomain transcription factor 2 isofo... PITX2 0.088 paired-like homeodomain transcription factor 2 isofo... PITX2 0.088 paired-like homeodomain transcription factor 2 isofo... PAX7 0.088 paired box 7 isoform 1 PAX7 0.088 paired box 7 isoform 2 PAX7 0.088 paired box 7 isoform 3 PRRX1 0.088 paired mesoderm homeobox 1 isoform pmx-1b SHOX 0.087 short stature homeobox isoform SHOXb SHOX 0.087 short stature homeobox isoform SHOXa PRRX1 0.087 paired mesoderm homeobox 1 isoform pmx-1a Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.