Guide to the Human Genome
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Name: YY1 Sequence: fasta or formatted (414aa) NCBI GI: 4507955
Description:

YY1 transcription factor

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         25           3
 C cysteine            1.9          8           1
 D aspartate           7.5         31           4
 E glutamate           8.5         35           5
 F phenylalanine       2.7         11           1
 G glycine            13.0         54           5
 H histidine           7.2         30          11
 I isoleucine          4.8         20           2
 K lysine              7.7         32           2
 L leucine             4.8         20           1
 M methionine          1.9          8           1
 N asparagine          1.9          8           2
 P proline             5.6         23           2
 Q glutamine           3.6         15           1
 R arginine            3.4         14           1
 S serine              5.6         23           4
 T threonine           5.8         24           2
 V valine              6.0         25           2
 W tryptophan          0.5          2           1
 Y tyrosine            1.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   YY1 transcription factor 
YY2                   0.468   YY2 transcription factor 
ZFP42                 0.305   zinc finger protein 42 
ZNF143                0.105   zinc finger protein 143 
ZNF596                0.103   zinc finger protein 596 
ZNF596                0.103   zinc finger protein 596 
ZNF596                0.103   zinc finger protein 596 
ZNF358                0.102   zinc finger protein 358 
ZNF266                0.102   zinc finger protein 266 
ZNF266                0.102   zinc finger protein 266 
ZNF76                 0.100   zinc finger protein 76 (expressed in testis) 
ZIC1                  0.097   zinc finger protein of the cerebellum 1 
MTF1                  0.097   metal-regulatory transcription factor 1 
ZNF787                0.097   zinc finger protein 787 
ZNF41                 0.097   zinc finger protein 41 
ZNF41                 0.097   zinc finger protein 41 
ZNF628                0.097   zinc finger protein 628 
ZNF629                0.097   zinc finger protein 629 
ZNF333                0.096   zinc finger protein 333 
ZNF726                0.096   PREDICTED: zinc finger protein 726 
ZNF726                0.096   PREDICTED: zinc finger protein 726 
ZNF726                0.096   PREDICTED: zinc finger protein 726 
ZNF664                0.096   zinc finger protein 664 
ZIC2                  0.094   zinc finger protein of the cerebellum 2 
ZNF782                0.094   zinc finger protein 782 
ZFP92                 0.094   zinc finger protein 92 homolog 
ZNF410                0.094   zinc finger protein 410 
ZSCAN29               0.094   zinc finger protein 690 
LOC100292052          0.092   PREDICTED: similar to hCG1773661 
LOC100287226          0.092   PREDICTED: similar to hCG1773661 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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