Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: NUFIP2 Sequence: fasta or formatted (695aa) NCBI GI: 32698730
Description:

nuclear fragile X mental retardation protein interacting protein 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         35           2
 C cysteine            0.1          1           1
 D aspartate           4.3         30           2
 E glutamate           5.6         39           2
 F phenylalanine       2.2         15           1
 G glycine             7.6         53           2
 H histidine           4.7         33           7
 I isoleucine          3.9         27           2
 K lysine              8.3         58           3
 L leucine             6.2         43           2
 M methionine          1.7         12           1
 N asparagine          5.8         40           2
 P proline             6.9         48           3
 Q glutamine           7.6         53           6
 R arginine            2.3         16           2
 S serine             12.2         85           8
 T threonine           7.1         49           2
 V valine              4.7         33           2
 W tryptophan          0.7          5           1
 Y tyrosine            2.9         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear fragile X mental retardation protein interac... 
CREB5                 0.027   cAMP responsive element binding protein 5 isoform de...
CREB5                 0.027   cAMP responsive element binding protein 5 isoform be...
CREB5                 0.027   cAMP responsive element binding protein 5 isoform ga...
CREB5                 0.027   cAMP responsive element binding protein 5 isoform al...
FOXB2                 0.024   forkhead box B2 
HRG                   0.023   histidine-rich glycoprotein precursor 
ARID1B                0.022   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.022   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.022   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
OTX1                  0.022   orthodenticle homeobox 1 
FAM76B                0.021   hypothetical protein LOC143684 
C10orf140             0.021   hypothetical protein LOC387640 
RBM33                 0.020   RNA binding motif protein 33 
PHLDA1                0.019   pleckstrin homology-like domain, family A, member 1 ...
POU4F2                0.019   Brn3b POU domain transcription factor 
BMP2K                 0.017   BMP-2 inducible kinase isoform a 
BMP2K                 0.017   BMP-2 inducible kinase isoform b 
NR4A3                 0.017   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.017   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.017   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.017   nuclear receptor subfamily 4, group A, member 3 isof...
DYRK1A                0.017   dual-specificity tyrosine-(Y)-phosphorylation regula...
DYRK1A                0.017   dual-specificity tyrosine-(Y)-phosphorylation regula...
FOXG1                 0.017   forkhead box G1 
SLC39A6               0.017   solute carrier family 39 (zinc transporter), member...
TSC22D1               0.017   TSC22 domain family, member 1 isoform 1 
MEOX2                 0.017   mesenchyme homeobox 2 
AMOT                  0.017   angiomotin isoform 1 
MAFB                  0.016   transcription factor MAFB 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press