Guide to the Human Genome
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Name: SIAH3 Sequence: fasta or formatted (269aa) NCBI GI: 110578665
Description:

seven in absentia homolog 3

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         21           2
 C cysteine            4.1         11           1
 D aspartate           3.3          9           1
 E glutamate           4.8         13           1
 F phenylalanine       4.8         13           2
 G glycine             4.5         12           1
 H histidine          11.9         32           4
 I isoleucine          4.1         11           2
 K lysine              1.9          5           1
 L leucine            11.9         32           2
 M methionine          2.6          7           2
 N asparagine          2.6          7           1
 P proline             5.2         14           1
 Q glutamine           4.8         13           1
 R arginine            5.9         16           2
 S serine              5.2         14           2
 T threonine           5.2         14           1
 V valine              7.1         19           3
 W tryptophan          1.1          3           1
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   seven in absentia homolog 3 
SIAH2                 0.307   seven in absentia homolog 2 
SIAH1                 0.293   seven in absentia homolog 1 isoform b 
SIAH1                 0.293   seven in absentia homolog 1 isoform a 
FOXB2                 0.047   forkhead box B2 
ARID1B                0.045   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.045   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.045   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
TSC22D1               0.040   TSC22 domain family, member 1 isoform 1 
OTX1                  0.038   orthodenticle homeobox 1 
NUFIP2                0.038   nuclear fragile X mental retardation protein interac...
DYRK1A                0.036   dual-specificity tyrosine-(Y)-phosphorylation regula...
DYRK1A                0.036   dual-specificity tyrosine-(Y)-phosphorylation regula...
HRCT1                 0.036   histidine rich carboxyl terminus 1 
MAFA                  0.035   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
VGLL3                 0.035   colon carcinoma related protein 
FOXG1                 0.033   forkhead box G1 
RNF111                0.031   ring finger protein 111 
MAFB                  0.031   transcription factor MAFB 
FUSSEL18              0.031   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.031   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.031   PREDICTED: functional smad suppressing element 18 [...
DLGAP3                0.029   discs, large (Drosophila) homolog-associated protei...
NR4A3                 0.029   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.029   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.029   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.029   nuclear receptor subfamily 4, group A, member 3 isof...
NKD2                  0.029   naked cuticle homolog 2 
CREB5                 0.027   cAMP responsive element binding protein 5 isoform de...
CREB5                 0.027   cAMP responsive element binding protein 5 isoform be...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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