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Search of human proteins with 54112103
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|54112103 ectodysplasin A isoform EDA-B [Homo sapiens]
(178 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|54112103 ectodysplasin A isoform EDA-B [Homo sapiens] 366 e-102
gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens] 346 7e-96
gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens] 346 7e-96
gi|54112105 ectodysplasin A isoform EDA-C [Homo sapiens] 275 1e-74
gi|54112113 ectodysplasin A isoform EDA-O [Homo sapiens] 274 3e-74
gi|54112107 ectodysplasin A isoform EDA-D [Homo sapiens] 274 3e-74
gi|14249622 ajuba isoform 1 [Homo sapiens] 35 0.034
gi|38194224 G protein-coupled receptor 25 [Homo sapiens] 35 0.034
gi|239751655 PREDICTED: hypothetical protein XP_002347961 [Homo ... 35 0.044
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 33 0.099
gi|116812620 hypothetical protein LOC147965 [Homo sapiens] 33 0.099
gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens] 33 0.13
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 33 0.13
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 32 0.22
gi|61744445 ficolin 2 isoform a precursor [Homo sapiens] 32 0.22
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 32 0.22
gi|122937215 prospero homeobox 2 [Homo sapiens] 32 0.22
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 32 0.29
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 32 0.29
gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens] 32 0.29
gi|16076875 tripartite motif-containing 7 isoform 4 [Homo sapiens] 32 0.29
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 31 0.49
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 31 0.49
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 31 0.49
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 31 0.64
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 31 0.64
gi|8924248 SRY-box 18 [Homo sapiens] 31 0.64
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 30 0.84
gi|134254446 patched isoform L [Homo sapiens] 30 0.84
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 30 0.84
>gi|54112103 ectodysplasin A isoform EDA-B [Homo sapiens]
Length = 178
Score = 366 bits (939), Expect = e-102
Identities = 178/178 (100%), Positives = 178/178 (100%)
Query: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
Sbjct: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
Query: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
Sbjct: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
Query: 121 AALHSDSQDGHQMALLNFFFPDEKPYSEEESRRVRRNKRSKSNEGADGKSTQLILYHF 178
AALHSDSQDGHQMALLNFFFPDEKPYSEEESRRVRRNKRSKSNEGADGKSTQLILYHF
Sbjct: 121 AALHSDSQDGHQMALLNFFFPDEKPYSEEESRRVRRNKRSKSNEGADGKSTQLILYHF 178
>gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens]
Length = 389
Score = 346 bits (887), Expect = 7e-96
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
Sbjct: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
Query: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
Sbjct: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
Query: 121 AALHSDSQDGHQMALLNFFFPDEKPYSEEESRRVRRNKRSKSNEGADG 168
AALHSDSQDGHQMALLNFFFPDEKPYSEEESRRVRRNKRSKSNEGADG
Sbjct: 121 AALHSDSQDGHQMALLNFFFPDEKPYSEEESRRVRRNKRSKSNEGADG 168
>gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens]
Length = 391
Score = 346 bits (887), Expect = 7e-96
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
Sbjct: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
Query: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
Sbjct: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
Query: 121 AALHSDSQDGHQMALLNFFFPDEKPYSEEESRRVRRNKRSKSNEGADG 168
AALHSDSQDGHQMALLNFFFPDEKPYSEEESRRVRRNKRSKSNEGADG
Sbjct: 121 AALHSDSQDGHQMALLNFFFPDEKPYSEEESRRVRRNKRSKSNEGADG 168
>gi|54112105 ectodysplasin A isoform EDA-C [Homo sapiens]
Length = 147
Score = 275 bits (703), Expect = 1e-74
Identities = 133/136 (97%), Positives = 135/136 (99%)
Query: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
Sbjct: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
Query: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
Sbjct: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
Query: 121 AALHSDSQDGHQMALL 136
AALHSDSQDGHQ++ L
Sbjct: 121 AALHSDSQDGHQVSHL 136
>gi|54112113 ectodysplasin A isoform EDA-O [Homo sapiens]
Length = 135
Score = 274 bits (700), Expect = 3e-74
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
Sbjct: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
Query: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
Sbjct: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
Query: 121 AALHSDSQDGHQ 132
AALHSDSQDGHQ
Sbjct: 121 AALHSDSQDGHQ 132
>gi|54112107 ectodysplasin A isoform EDA-D [Homo sapiens]
Length = 142
Score = 274 bits (700), Expect = 3e-74
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC
Sbjct: 1 MGYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCC 60
Query: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE
Sbjct: 61 YLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
Query: 121 AALHSDSQDGHQ 132
AALHSDSQDGHQ
Sbjct: 121 AALHSDSQDGHQ 132
>gi|14249622 ajuba isoform 1 [Homo sapiens]
Length = 538
Score = 35.0 bits (79), Expect = 0.034
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 64 LRSELRRERGAESRLGGSGTPGT-SGTLSSLGGLDPDSPITSHLGQPSPKQQPLEP 118
L + R +G SR G GTPG G LS LGG P + G P +PLEP
Sbjct: 11 LLEKFGRRKGESSRSGSDGTPGPGKGRLSGLGGPRKSGPRGATGG---PGDEPLEP 63
>gi|38194224 G protein-coupled receptor 25 [Homo sapiens]
Length = 361
Score = 35.0 bits (79), Expect = 0.034
Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 2 GYPEVERRELLPAAAPRERGSQGCGCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCCY 61
G P + R L P G Q CG P+ A +G S LL L F L L ++TL CY
Sbjct: 171 GLPSLVYRGLQPLP-----GGQDSQCGEEPSHAFQGLSLLLLLLTFVLPL---VVTLFCY 222
Query: 62 LELRSELRR 70
+ LRR
Sbjct: 223 CRISRRLRR 231
>gi|239751655 PREDICTED: hypothetical protein XP_002347961 [Homo
sapiens]
Length = 642
Score = 34.7 bits (78), Expect = 0.044
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 79 GGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQ-QPLEPGEAALHSDSQDGHQMALLN 137
G + +P G L+ G P +P L PS ++ Q P E + HQ L
Sbjct: 30 GNAASPSPDGQLA---GPRPSAPDWMRLQSPSHRKFQTQSPVEWVSGLCCSEKHQRWLRC 86
Query: 138 FFFP----DEKPYSEEESRRVRRNKRSKSNEGADGKSTQLIL 175
FFP +E +E R +R + +K +EG +GK + L L
Sbjct: 87 SFFPAVTCNEHERHKENHRHLRSQEMTKYSEGDEGKKSTLRL 128
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 33.5 bits (75), Expect = 0.099
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 72 RGAESRLGGSGTPGTSGTLSS--LGGLDPDSPITSHLGQPSPKQQPLEPGE 120
+G+ LG +G PG G L G D I LG P PK + E GE
Sbjct: 1284 KGSRGSLGPTGAPGRMGAQGEPGLAGYDGHKGIVGPLGPPGPKGEKGEQGE 1334
Score = 30.8 bits (68), Expect = 0.64
Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 72 RGAESRLGGSGTPGTSGTLSSLGGLDPDSPI-----TSHLGQPSPKQQPLEPGEAALHSD 126
RG G SG PGT G G P PI G P +P PGEA + D
Sbjct: 1110 RGFPGIPGPSGPPGTKGLPGEPGPQGPQGPIGPPGEMGPKGPPGAVGEPGLPGEAGMKGD 1169
Score = 29.3 bits (64), Expect = 1.9
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSH-----LGQPSPKQQPLEPGE 120
E G + G G PG G G PD P G P P+ +P PG+
Sbjct: 1043 EPGPQGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQGRPGRPGQ 1097
>gi|116812620 hypothetical protein LOC147965 [Homo sapiens]
Length = 349
Score = 33.5 bits (75), Expect = 0.099
Identities = 27/71 (38%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 26 GCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCCYLELRSELRRERGAESRLGGSGTPG 85
G GG P A G SC F G + LA L TL E +RE GAE G G
Sbjct: 22 GYGGVPGAASRGASCPDFRGLC-VRLAAELATLGAL-----EQQREAGAEVLSAGDGPGA 75
Query: 86 TSGTLSSLGGL 96
L LG L
Sbjct: 76 EEDFLRQLGSL 86
>gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens]
Length = 957
Score = 33.1 bits (74), Expect = 0.13
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 68 LRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPG 119
++ GA+ G G PG G + S G +S + +G PK QP +PG
Sbjct: 726 IQGHHGAKGERGEKGEPGVRGAIGSKG----ESGVDGLMGPAGPKGQPGDPG 773
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 33.1 bits (74), Expect = 0.13
Identities = 17/47 (36%), Positives = 20/47 (42%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPG 119
G + G G PG SG + G SH G P PK +P PG
Sbjct: 1048 GDQGEPGSPGPPGFSGIDGARGPKGNKGDPASHFGPPGPKGEPGSPG 1094
Score = 29.3 bits (64), Expect = 1.9
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPG 119
G G GTPG G G P H G+P K QP PG
Sbjct: 984 GFPGERGDKGTPGMQGRRGEPGRYGPPG---FHRGEPGEKGQPGPPG 1027
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 32.3 bits (72), Expect = 0.22
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSP-----ITSHLGQPSPKQQPLEPGE 120
ERG + +G G PG G LG P P +T GQP PK GE
Sbjct: 662 ERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGE 716
Score = 28.1 bits (61), Expect = 4.1
Identities = 29/103 (28%), Positives = 33/103 (32%), Gaps = 29/103 (28%)
Query: 13 PAAAPRERGSQGC-GCGGAPARAGEGNSCLLFLGFFGLSLALHLLTLCCYLELRSELRRE 71
P P E+G G G G P R G S +GF G
Sbjct: 857 PLGPPGEKGKLGVPGLPGYPGRQGPKGS----IGFPGFP--------------------- 891
Query: 72 RGAESRLGGSGTPGTSGTLSSLGGLDP--DSPITSHLGQPSPK 112
GA GG GTPG G G P + G+P PK
Sbjct: 892 -GANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPK 933
Score = 26.9 bits (58), Expect = 9.2
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSP--ITSHLGQPSPKQQPLEPGEA 121
E+G +G G PG G G D P +G P + EPGEA
Sbjct: 1238 EKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEA 1290
>gi|61744445 ficolin 2 isoform a precursor [Homo sapiens]
Length = 313
Score = 32.3 bits (72), Expect = 0.22
Identities = 26/82 (31%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 42 LFLGFFGLSLALHLLTLC-----CYLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGL 96
L L F G++ AL C LE +L RG G G G +GT G
Sbjct: 15 LLLSFLGMAWALQAADTCPEVKMVGLEGSDKLTILRGCPGLPGAPGPKGEAGTNGKRGER 74
Query: 97 DPDSPITSHLGQPSPKQQPLEP 118
P P G P P P EP
Sbjct: 75 GPPGP-PGKAGPPGPNGAPGEP 95
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 32.3 bits (72), Expect = 0.22
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPI--TSHLGQPSPKQQPLEPG 119
++G G +G PG G S+G + P P H G P P P PG
Sbjct: 1375 QKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGAPGPSGSPGLPG 1425
Score = 28.1 bits (61), Expect = 4.1
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 72 RGAESRLGGSGTPGTSGTLSSLG--GLDPD---SPITSHLGQPSPKQQPLEPG 119
RG+ G G PG G + S G GL + + +T G+P P QP PG
Sbjct: 1041 RGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPG 1093
>gi|122937215 prospero homeobox 2 [Homo sapiens]
Length = 592
Score = 32.3 bits (72), Expect = 0.22
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 8 RRELLPAAAPRE--RGSQGCGCGGAPARAGEGNSC 40
+ +L AA PR+ +G GCG G P A +GN C
Sbjct: 147 QEHILQAAKPRDTAQGPGGCGTGKGPLSAKQGNGC 181
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 32.0 bits (71), Expect = 0.29
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHL-GQPSPKQQPLEPG 119
E G++ G G PG SG L GL D+ T + G P PK QP E G
Sbjct: 1046 ESGSQGIRGSPGLPGASG----LPGLKGDNGQTVEISGSPGPKGQPGESG 1091
Score = 28.1 bits (61), Expect = 4.1
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 68 LRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSP 111
LR E+G + LG G G SG + GG+ P T G+P P
Sbjct: 460 LRGEQGPKGNLGLKGIKGDSGFCACDGGV----PNTGPPGEPGP 499
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 32.0 bits (71), Expect = 0.29
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHL-GQPSPKQQPLEPG 119
E G++ G G PG SG L GL D+ T + G P PK QP E G
Sbjct: 1045 ESGSQGIRGSPGLPGASG----LPGLKGDNGQTVEISGSPGPKGQPGESG 1090
Score = 28.1 bits (61), Expect = 4.1
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 68 LRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSP 111
LR E+G + LG G G SG + GG+ P T G+P P
Sbjct: 459 LRGEQGPKGNLGLKGIKGDSGFCACDGGV----PNTGPPGEPGP 498
>gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens]
Length = 511
Score = 32.0 bits (71), Expect = 0.29
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 8 RRELLPAAAPRERGSQGCGCGGAPARAGE 36
RR LPAAAP E GSQ A AR G+
Sbjct: 104 RRFSLPAAAPGEHGSQAAAARAAAARCGQ 132
>gi|16076875 tripartite motif-containing 7 isoform 4 [Homo sapiens]
Length = 221
Score = 32.0 bits (71), Expect = 0.29
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 8 RRELLPAAAPRERGSQGCGCGGAPARAGE 36
RR LPAAAP E GSQ A AR G+
Sbjct: 104 RRFSLPAAAPGEHGSQAAAARAAAARCGQ 132
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 31.2 bits (69), Expect = 0.49
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 64 LRSE--LRRERGAESRLGGSGTPGTSG-TLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
LR E +R ++G G G PG SG T+ G G+P P+ +P PG+
Sbjct: 142 LRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGD 201
Query: 121 AALHSDSQDG 130
L D+ G
Sbjct: 202 RGLKGDNGVG 211
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 31.2 bits (69), Expect = 0.49
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEA 121
ERG G GTPGT G G P G+ P P +PGEA
Sbjct: 423 ERGGPGERGPRGTPGTRGPRGDPGEAGPQ----GDQGREGPVGVPGDPGEA 469
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 31.2 bits (69), Expect = 0.49
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 66 SELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPG 119
S+ ERG G G PG G + + G+D D G P P +P +PG
Sbjct: 262 SQTTDERGPPGEQGPPGPPGPPG-VPGIDGIDGDRGPKGPPGPPGPAGEPGKPG 314
Score = 29.3 bits (64), Expect = 1.9
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAAL 123
+RGAE G G PG G + L G+D I G +P PG+A L
Sbjct: 518 DRGAEGARGIPGLPGPKGD-TGLPGVDGRDGIPGMPGTKGEPGKPGPPGDAGL 569
Score = 27.3 bits (59), Expect = 7.1
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 11/59 (18%)
Query: 73 GAESRLGGSGTPGTSGTLSSLG-----------GLDPDSPITSHLGQPSPKQQPLEPGE 120
G+ LG G+PG G L SLG GL +G+P PK + GE
Sbjct: 625 GSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPPGLPGMKGDRGVVGEPGPKGEQGASGE 683
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 30.8 bits (68), Expect = 0.64
Identities = 19/58 (32%), Positives = 21/58 (36%), Gaps = 11/58 (18%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSP-----------ITSHLGQPSPKQQPLEPG 119
G +G SG PG GT G + P P H GQP P P PG
Sbjct: 1137 GPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPG 1194
Score = 28.5 bits (62), Expect = 3.2
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 72 RGAESRLGGSGTPGTSGTLSSLGGLDPDSPI--------TSHLGQPSPKQQPLEPGE 120
+G GG G+PG G GG D T +G P P QP + GE
Sbjct: 725 QGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGE 781
Score = 28.1 bits (61), Expect = 4.1
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 10/41 (24%)
Query: 79 GGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPG 119
G +GTPG G GG LG P PK EPG
Sbjct: 717 GAAGTPGLQGMPGERGG----------LGSPGPKGDKGEPG 747
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 30.8 bits (68), Expect = 0.64
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 79 GGSGTPGTSGTLSSLGGLDPDSPITSH-----LGQPSPKQQPLEPGEAALHSD 126
G G PG G + G L P P+ G P PK P +PG L D
Sbjct: 944 GEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKGD 996
Score = 26.9 bits (58), Expect = 9.2
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPK 112
E+G G G PG G G P P T G+P P+
Sbjct: 561 EKGQRGDFGHVGQPGPPGEDGERGAEGPPGP-TGQAGEPGPR 601
>gi|8924248 SRY-box 18 [Homo sapiens]
Length = 384
Score = 30.8 bits (68), Expect = 0.64
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 84 PGTSGTLSSLGGLDPDSPITSHLGQPSPKQQP---LEPGEAALHSDSQDGHQMALLNFFF 140
P SG+ + L P LG P+P++ P LEPGEAA AL
Sbjct: 188 PAASGSARAFRELPPLGAEFDGLGLPTPERSPLDGLEPGEAAFFPPPAAPEDCALR---- 243
Query: 141 PDEKPYSEEESRR 153
P PY+ E R
Sbjct: 244 PFRAPYAPTELSR 256
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein
[Homo sapiens]
Length = 3969
Score = 30.4 bits (67), Expect = 0.84
Identities = 45/173 (26%), Positives = 61/173 (35%), Gaps = 26/173 (15%)
Query: 14 AAAPRERGSQGCGCGGAPARAGEGNS-----------------CLLFLGFFGLSLALHLL 56
AAA GS G G G A A +S LL +G G AL +
Sbjct: 61 AAAAAAAGSSGAGVPGGAAAASAASSSSASSSSSSSSSASSGPALLRVG-PGFDAALQVS 119
Query: 57 TLCCYLELRSELRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPL 116
+ + LRR R GG G G G D + + S PS K P
Sbjct: 120 A-----AIGTNLRRFRAVFGESGGGGGSGEDEQFLGFGS-DEEVRVRSPTRSPSVKTSPR 173
Query: 117 EPGEAALHSDSQDGHQMALLNFFFPDEKPYSEEESRRVRRNKRSKSNEGADGK 169
+P ++ ++ + F P K SE +S + K SKS E G+
Sbjct: 174 KPRGRPRSGSDRNSAILSDPSVFSPLNK--SETKSGDKIKKKDSKSIEKKRGR 224
>gi|134254446 patched isoform L [Homo sapiens]
Length = 1447
Score = 30.4 bits (67), Expect = 0.84
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 14 AAAPRERGSQGCGCGGAPARAGEG 37
AA P++RG G GC GAP R G
Sbjct: 7 AAEPQDRGGGGSGCIGAPGRPAGG 30
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 30.4 bits (67), Expect = 0.84
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 69 RRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPG-EAALHSDS 127
R ERG G +GTPG G + G P P+ G P EPG E +D
Sbjct: 1001 RGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPV----GPPGSNGPVGEPGPEGPAGNDG 1056
Query: 128 QDGHQMAL 135
G A+
Sbjct: 1057 TPGRDGAV 1064
Score = 30.0 bits (66), Expect = 1.1
Identities = 19/55 (34%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 69 RRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAAL 123
R ERG G G G G GG PD P G P P P + G L
Sbjct: 710 RGERGNPGERGEPGITGLPGEKGMAGGHGPDGP----KGSPGPSGTPGDTGPPGL 760
Score = 29.3 bits (64), Expect = 1.9
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPI--TSHLGQPSPKQQPLEPG 119
+RG G GT G G G L P P T G+P P+ PG
Sbjct: 778 DRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPG 828
Score = 29.3 bits (64), Expect = 1.9
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 73 GAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGE 120
G G G+ G +G ++G P P GQP K +P EPG+
Sbjct: 825 GPPGSRGNPGSRGENGPTGAVGFAGPQGPD----GQPGVKGEPGEPGQ 868
Score = 28.1 bits (61), Expect = 4.1
Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 11/62 (17%)
Query: 73 GAESRLGGSGTPGTSGTLSSLG-----------GLDPDSPITSHLGQPSPKQQPLEPGEA 121
G R G +G PG+ G G G+D + + G P P P PG
Sbjct: 126 GIRGRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHPGPD 185
Query: 122 AL 123
L
Sbjct: 186 GL 187
Score = 28.1 bits (61), Expect = 4.1
Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 71 ERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDS 127
E G E G GTPG G + G P G P + P PG D+
Sbjct: 1045 EPGPEGPAGNDGTPGRDGAVGERGDRGDPGP----AGLPGSQGAPGTPGPVGAPGDA 1097
Score = 26.9 bits (58), Expect = 9.2
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 72 RGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPK---QQPLEPGEA 121
+G E +LG G PG G G + S +G P PK P +PGEA
Sbjct: 581 QGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGS-MGLPGPKGSSGDPGKPGEA 632
Score = 26.9 bits (58), Expect = 9.2
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 68 LRRERGAESRLGGSGTPGTSGTLSSLGGLDPDSPITSHLGQPSPKQQPLEPGEAALH 124
L+ RG + G +G PG++G + G P LG+P + P G+ H
Sbjct: 895 LKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGP-AGPLGEPGKEGPPGLRGDPGSH 950
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,390,195
Number of Sequences: 37866
Number of extensions: 444727
Number of successful extensions: 2325
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 1864
Number of HSP's gapped (non-prelim): 580
length of query: 178
length of database: 18,247,518
effective HSP length: 96
effective length of query: 82
effective length of database: 14,612,382
effective search space: 1198215324
effective search space used: 1198215324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.