Guide to the Human Genome
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Name: LOC100290283 Sequence: fasta or formatted (642aa) NCBI GI: 239751655
Description:

PREDICTED: hypothetical protein XP_002347961

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         33           3
 C cysteine            5.1         33           2
 D aspartate           3.1         20           1
 E glutamate           7.0         45           2
 F phenylalanine       4.4         28           2
 G glycine             7.8         50           2
 H histidine           5.9         38           2
 I isoleucine          3.9         25           2
 K lysine              7.6         49           2
 L leucine             4.5         29           2
 M methionine          1.9         12           1
 N asparagine          2.0         13           1
 P proline             5.8         37           2
 Q glutamine           3.9         25           1
 R arginine            8.4         54           2
 S serine              9.7         62           4
 T threonine           5.9         38           1
 V valine              3.1         20           1
 W tryptophan          1.9         12           1
 Y tyrosine            3.0         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347961 
ZNF136                0.560   zinc finger protein 136 
ZNF627                0.383   zinc finger protein 627 
ZNF564                0.372   zinc finger protein 564 
ZNF442                0.339   zinc finger protein 442 
ZNF433                0.338   zinc finger protein 433 
ZNF563                0.336   zinc finger protein 563 
ZNF443                0.334   zinc finger protein 443 
ZNF44                 0.332   zinc finger protein 44 
ZNF799                0.331   zinc finger protein 799 
ZNF709                0.330   zinc finger protein 709 isoform a 
ZNF791                0.325   zinc finger protein 791 
ZNF14                 0.325   zinc finger protein 14 
ZNF490                0.321   zinc finger protein 490 
ZNF823                0.320   ZFP-36 for a zinc finger protein 
LOC729747             0.320   similar to zinc finger protein 709 
LOC100292533          0.317   PREDICTED: similar to zinc finger protein 564 [Homo...
LOC100290363          0.317   PREDICTED: hypothetical protein XP_002347962 
LOC100287841          0.317   PREDICTED: hypothetical protein XP_002343682 
ZNF700                0.313   zinc finger protein 700 
ZNF20                 0.311   zinc finger protein 20 
ZNF441                0.300   zinc finger protein 441 
ZNF440                0.299   zinc finger protein 440 
ZNF670                0.299   zinc finger protein 670 
ZNF844                0.299   zinc finger protein 844 
ZNF439                0.299   zinc finger protein 439 
ZNF763                0.292   zinc finger protein 440 like 
ZNF669                0.292   zinc finger protein 669 isoform 2 
ZNF669                0.291   zinc finger protein 669 isoform 1 
ZNF709                0.289   zinc finger protein 709 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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