BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|53759134 endonuclease G precursor [Homo sapiens] (297 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|53759134 endonuclease G precursor [Homo sapiens] 602 e-172 gi|224451073 endo/exonuclease (5'-3'), endonuclease G-like isofo... 179 3e-45 gi|224451075 endo/exonuclease (5'-3'), endonuclease G-like isofo... 163 2e-40 gi|4503727 FK506 binding protein 3, 25kDa [Homo sapiens] 34 0.14 gi|7710129 LIM domain only 6 [Homo sapiens] 33 0.23 gi|54607086 eukaryotic elongation factor, selenocysteine-tRNA-sp... 32 0.88 gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 31 1.1 gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 31 1.1 gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 30 2.0 gi|91208420 bassoon protein [Homo sapiens] 30 2.0 gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 30 2.6 gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 30 2.6 gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 30 2.6 gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 30 2.6 gi|17402888 neuronal pentraxin receptor [Homo sapiens] 30 2.6 gi|239756268 PREDICTED: hypothetical protein XP_002344877 [Homo ... 30 2.6 gi|239745177 PREDICTED: hypothetical protein XP_002343381 [Homo ... 30 2.6 gi|126352608 elastin isoform e precursor [Homo sapiens] 30 3.3 gi|126352446 elastin isoform d precursor [Homo sapiens] 30 3.3 gi|126352322 elastin isoform c precursor [Homo sapiens] 30 3.3 gi|126352700 elastin isoform b precursor [Homo sapiens] 30 3.3 gi|126352440 elastin isoform a precursor [Homo sapiens] 30 3.3 gi|18426973 DR1-associated protein 1 [Homo sapiens] 30 3.3 gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 30 3.3 gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 30 3.3 gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 30 3.3 gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 30 3.3 gi|148225659 endonuclease domain containing 1 [Homo sapiens] 30 3.3 gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 29 4.4 gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 29 4.4 >gi|53759134 endonuclease G precursor [Homo sapiens] Length = 297 Score = 602 bits (1553), Expect = e-172 Identities = 297/297 (100%), Positives = 297/297 (100%) Query: 1 MRALRAGLTLASGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRG 60 MRALRAGLTLASGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRG Sbjct: 1 MRALRAGLTLASGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRG 60 Query: 61 PGELAKYGLPGLAQLKSRESYVLCYDPRTRGALWVVEQLRPERLRGDGDRRECDFREDDS 120 PGELAKYGLPGLAQLKSRESYVLCYDPRTRGALWVVEQLRPERLRGDGDRRECDFREDDS Sbjct: 61 PGELAKYGLPGLAQLKSRESYVLCYDPRTRGALWVVEQLRPERLRGDGDRRECDFREDDS 120 Query: 121 VHAYHRATNADYRGSGFDRGHLAAAANHRWSQKAMDDTFYLSNVAPQVPHLNQNAWNNLE 180 VHAYHRATNADYRGSGFDRGHLAAAANHRWSQKAMDDTFYLSNVAPQVPHLNQNAWNNLE Sbjct: 121 VHAYHRATNADYRGSGFDRGHLAAAANHRWSQKAMDDTFYLSNVAPQVPHLNQNAWNNLE 180 Query: 181 KYSRSLTRSYQNVYVCTGPLFLPRTEADGKSYVKYQVIGKNHVAVPTHFFKVLILEAAGG 240 KYSRSLTRSYQNVYVCTGPLFLPRTEADGKSYVKYQVIGKNHVAVPTHFFKVLILEAAGG Sbjct: 181 KYSRSLTRSYQNVYVCTGPLFLPRTEADGKSYVKYQVIGKNHVAVPTHFFKVLILEAAGG 240 Query: 241 QIELRTYVMPNAPVDEAIPLERFLVPIESIERASGLLFVPNILARAGSLKAITAGSK 297 QIELRTYVMPNAPVDEAIPLERFLVPIESIERASGLLFVPNILARAGSLKAITAGSK Sbjct: 241 QIELRTYVMPNAPVDEAIPLERFLVPIESIERASGLLFVPNILARAGSLKAITAGSK 297 >gi|224451073 endo/exonuclease (5'-3'), endonuclease G-like isoform 1 precursor [Homo sapiens] Length = 368 Score = 179 bits (454), Expect = 3e-45 Identities = 90/232 (38%), Positives = 136/232 (58%), Gaps = 4/232 (1%) Query: 55 PGGPRGPGELAKYGLPGLA-QLKSRESYVLCYDPRTRGALWVVEQLRPERLRGDGDRREC 113 P G L ++G P + + ++ L YD R WV+E + ++ GD DR+ C Sbjct: 53 PDGSAEKAVLEQFGFPLTGTEARCYTNHALSYDQAKRVPRWVLEHISKSKIMGDADRKHC 112 Query: 114 DFREDDSVHAYHRATNADYRGSGFDRGHLAAAANHRWSQKAMDDTFYLSNVAPQVPHLNQ 173 F+ D ++ A N DY GSG+ RGH+A A N+++S KAM +TFYLSN+ PQ N Sbjct: 113 KFKPDPNIPPTFSAFNEDYVGSGWSRGHMAPAGNNKFSSKAMAETFYLSNIVPQDFDNNS 172 Query: 174 NAWNNLEKYSRSLTRSYQNVYVCTGPLFLPRTEADGKSYVKYQVIGKNHVAVPTHFFKVL 233 WN +E Y R LT +++V+V +GPL LP+T DGK V YQVIG+++VAVP+H +KV+ Sbjct: 173 GYWNRIEMYCRELTERFEDVWVVSGPLTLPQTRGDGKKIVSYQVIGEDNVAVPSHLYKVI 232 Query: 234 ILEAAGGQIE---LRTYVMPNAPVDEAIPLERFLVPIESIERASGLLFVPNI 282 + + E L +V+PN + L F V ++ +E+ SGL+F P++ Sbjct: 233 LARRSSVSTEPLALGAFVVPNEAIGFQPQLTEFQVSLQDLEKLSGLVFFPHL 284 >gi|224451075 endo/exonuclease (5'-3'), endonuclease G-like isoform 2 precursor [Homo sapiens] Length = 318 Score = 163 bits (412), Expect = 2e-40 Identities = 82/198 (41%), Positives = 123/198 (62%), Gaps = 6/198 (3%) Query: 88 RTRGALWVVEQLRPERLRGDGDRRECDFREDDSVHAYHRATNADYRGSGFDRGHLAAAAN 147 R++GA + +P+ GD DR+ C F+ D ++ A N DY GSG+ RGH+A A N Sbjct: 40 RSQGAEGALTGKQPD---GDADRKHCKFKPDPNIPPTFSAFNEDYVGSGWSRGHMAPAGN 96 Query: 148 HRWSQKAMDDTFYLSNVAPQVPHLNQNAWNNLEKYSRSLTRSYQNVYVCTGPLFLPRTEA 207 +++S KAM +TFYLSN+ PQ N WN +E Y R LT +++V+V +GPL LP+T Sbjct: 97 NKFSSKAMAETFYLSNIVPQDFDNNSGYWNRIEMYCRELTERFEDVWVVSGPLTLPQTRG 156 Query: 208 DGKSYVKYQVIGKNHVAVPTHFFKVLILEAAGGQIE---LRTYVMPNAPVDEAIPLERFL 264 DGK V YQVIG+++VAVP+H +KV++ + E L +V+PN + L F Sbjct: 157 DGKKIVSYQVIGEDNVAVPSHLYKVILARRSSVSTEPLALGAFVVPNEAIGFQPQLTEFQ 216 Query: 265 VPIESIERASGLLFVPNI 282 V ++ +E+ SGL+F P++ Sbjct: 217 VSLQDLEKLSGLVFFPHL 234 >gi|4503727 FK506 binding protein 3, 25kDa [Homo sapiens] Length = 224 Score = 34.3 bits (77), Expect = 0.14 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 1/82 (1%) Query: 94 WVVEQLRPERLRGDGDRRECDFREDDSVHAYHRAT-NADYRGSGFDRGHLAAAANHRWSQ 152 W VEQLR E+L + DS A H+ N ++ HL A NH + Sbjct: 10 WTVEQLRSEQLPKKDIIKFLQEHGSDSFLAEHKLLGNIKNVAKTANKDHLVTAYNHLFET 69 Query: 153 KAMDDTFYLSNVAPQVPHLNQN 174 K T +S V+ QV ++ N Sbjct: 70 KRFKGTESISKVSEQVKNVKLN 91 >gi|7710129 LIM domain only 6 [Homo sapiens] Length = 615 Score = 33.5 bits (75), Expect = 0.23 Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 11/140 (7%) Query: 40 LPVLPVAAAAELPPV-PGGPRGPGELAKYGLPGLAQLKSRESYVLCYDPRTRGALWVVEQ 98 +P L + + E PP PG P + + +G ++ R+ V PR + ++ Sbjct: 438 MPELGLRSVPEPPPESPGQPNLRPDDSAFGRQSTPRVSFRDPLVSEGGPRRTLSAPPAQR 497 Query: 99 LRPERLRGDGDRRECDFREDDSVHAYHRATNADYR-------GSGFDRGHLAAAANHRWS 151 RP R R R H +H + R GSG D +++ + S Sbjct: 498 RRP---RSPPPRAPSRRRHHHHNHHHHHNRHPSRRRHYQCDAGSGSDSESCSSSPSSSSS 554 Query: 152 QKAMDDTFYLSNVAPQVPHL 171 + + DD F+L P PHL Sbjct: 555 ESSEDDGFFLGERIPLPPHL 574 >gi|54607086 eukaryotic elongation factor, selenocysteine-tRNA-specific [Homo sapiens] Length = 596 Score = 31.6 bits (70), Expect = 0.88 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 6/47 (12%) Query: 41 PVLPVAAAAELPPVPGGPRGPGELAKYGLPGLAQLKSRESYVLCYDP 87 P++PVAA PGGP P A G+P L +L + + + DP Sbjct: 180 PIIPVAAK------PGGPEAPETEAPQGIPELIELLTSQISIPTRDP 220 >gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] Length = 1464 Score = 31.2 bits (69), Expect = 1.1 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 2/43 (4%) Query: 30 ARAAPGLLGRLPVLPVAAAAELPPVPGGPRGP-GELAKYGLPG 71 A APG+ G P P A P PGGP GP G + G PG Sbjct: 399 ANGAPGIAGA-PGFPGARGPSGPQGPGGPPGPKGNSGEPGAPG 440 >gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] Length = 680 Score = 31.2 bits (69), Expect = 1.1 Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Query: 33 APGLLGR--LPVLPVAAAAELPPVPGGPRGPGELAKYGLPG 71 +PGL G LP P +A P VPG P PGE YG G Sbjct: 87 SPGLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKG 127 Score = 28.9 bits (63), Expect = 5.7 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 9/60 (15%) Query: 41 PVLPVAAAAELPPVPG--------GPRG-PGELAKYGLPGLAQLKSRESYVLCYDPRTRG 91 P +P A +P PG GPRG PGE G+PG+ K Y P RG Sbjct: 144 PGIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERG 203 Score = 28.1 bits (61), Expect = 9.7 Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 2/41 (4%) Query: 34 PGLLGRLPVLPVAAAAELPPVPG--GPRGPGELAKYGLPGL 72 PG G + LP PG GP GP K GLPGL Sbjct: 266 PGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGL 306 >gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] Length = 1669 Score = 30.4 bits (67), Expect = 2.0 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%) Query: 30 ARAAPGLLGR--LPVLPVAAAAELPPVPGGPRGPGELAKYGLPG 71 A+ PG+ G+ LP LP A P +PG P GE+ G PG Sbjct: 847 AQGLPGITGQSGLPGLPGQQGA--PGIPGFPGSKGEMGVMGTPG 888 Score = 28.1 bits (61), Expect = 9.7 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Query: 34 PGLLGRL--PVLPVAAAAELPPVPGGPRGPGELAKYGLPGL 72 PG+ G+ P + + LP +PG P PGE G+PG+ Sbjct: 725 PGVQGQKGEPGVGLPGLKGLPGLPGIPGTPGEKGSIGVPGV 765 >gi|91208420 bassoon protein [Homo sapiens] Length = 3926 Score = 30.4 bits (67), Expect = 2.0 Identities = 14/31 (45%), Positives = 18/31 (58%) Query: 32 AAPGLLGRLPVLPVAAAAELPPVPGGPRGPG 62 +AP G+LP A + +PPVPG GPG Sbjct: 38 SAPAGGGQLPAAGAARSTAVPPVPGPGPGPG 68 >gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo sapiens] Length = 1818 Score = 30.0 bits (66), Expect = 2.6 Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 8/55 (14%) Query: 28 EDARAAPGLLGRLPVLPVAAAAELPPVPGGPRG-------PGELAKYGLPGLAQL 75 E R PG +G LP AA + PP P GP G PG + G PGL L Sbjct: 1419 EGLRGIPGPVGEQG-LPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGL 1472 >gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo sapiens] Length = 1767 Score = 30.0 bits (66), Expect = 2.6 Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 8/55 (14%) Query: 28 EDARAAPGLLGRLPVLPVAAAAELPPVPGGPRG-------PGELAKYGLPGLAQL 75 E R PG +G LP AA + PP P GP G PG + G PGL L Sbjct: 1368 EGLRGIPGPVGEQG-LPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGL 1421 >gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo sapiens] Length = 1806 Score = 30.0 bits (66), Expect = 2.6 Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 8/55 (14%) Query: 28 EDARAAPGLLGRLPVLPVAAAAELPPVPGGPRG-------PGELAKYGLPGLAQL 75 E R PG +G LP AA + PP P GP G PG + G PGL L Sbjct: 1407 EGLRGIPGPVGEQG-LPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGL 1460 >gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] Length = 1466 Score = 30.0 bits (66), Expect = 2.6 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 5/57 (8%) Query: 24 RRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRG-PGELAKYGLPGLAQLKSRE 79 R + APGL G LP A P P GPRG PGE + GLPG A + + Sbjct: 271 RNGEKGETGAPGLKGENG-LPGENGA---PGPMGPRGAPGERGRPGLPGAAGARGND 323 >gi|17402888 neuronal pentraxin receptor [Homo sapiens] Length = 500 Score = 30.0 bits (66), Expect = 2.6 Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 2 RALRAGLTLASGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGP 58 RAL G AS A A G +R A G G P LP A AA P+P GP Sbjct: 34 RALPGGADNASVASGAAASPGPQRSLSALHGAGGSAGP-PALPGAPAASAHPLPPGP 89 >gi|239756268 PREDICTED: hypothetical protein XP_002344877 [Homo sapiens] Length = 252 Score = 30.0 bits (66), Expect = 2.6 Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 11/78 (14%) Query: 5 RAGLTLASGAGLGAVVEGWRRRREDARA----------APGLLGRLPVLPVAAAAELPPV 54 RAG A G L V E WR R+ +A A APG LP P+ AA + Sbjct: 106 RAGGNRAYGRELLQVAEVWRIRQREAGAARAARAPKPPAPGSGQALPADPLLQAA-ASTL 164 Query: 55 PGGPRGPGELAKYGLPGL 72 G PR P G GL Sbjct: 165 AGRPRAPPPAPAAGQRGL 182 >gi|239745177 PREDICTED: hypothetical protein XP_002343381 [Homo sapiens] Length = 252 Score = 30.0 bits (66), Expect = 2.6 Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 11/78 (14%) Query: 5 RAGLTLASGAGLGAVVEGWRRRREDARA----------APGLLGRLPVLPVAAAAELPPV 54 RAG A G L V E WR R+ +A A APG LP P+ AA + Sbjct: 106 RAGGNRAYGRELLQVAEVWRIRQREAGAAGAARAPKPPAPGSGQALPADPLLQAA-ASTL 164 Query: 55 PGGPRGPGELAKYGLPGL 72 G PR P G GL Sbjct: 165 AGRPRAPPPAPAAGQRGL 182 >gi|126352608 elastin isoform e precursor [Homo sapiens] Length = 705 Score = 29.6 bits (65), Expect = 3.3 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%) Query: 12 SGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRGPGELAKYGLPG 71 +G G+G + A+ G G VLP A +P VPG G G +A G P Sbjct: 246 TGTGVGPQAAAAAAAKAAAKFGAGAAG---VLPGVGGAGVPGVPGAIPGIGGIAGVGTPA 302 Query: 72 LA 73 A Sbjct: 303 AA 304 >gi|126352446 elastin isoform d precursor [Homo sapiens] Length = 711 Score = 29.6 bits (65), Expect = 3.3 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%) Query: 12 SGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRGPGELAKYGLPG 71 +G G+G + A+ G G VLP A +P VPG G G +A G P Sbjct: 251 TGTGVGPQAAAAAAAKAAAKFGAGAAG---VLPGVGGAGVPGVPGAIPGIGGIAGVGTPA 307 Query: 72 LA 73 A Sbjct: 308 AA 309 >gi|126352322 elastin isoform c precursor [Homo sapiens] Length = 692 Score = 29.6 bits (65), Expect = 3.3 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%) Query: 12 SGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRGPGELAKYGLPG 71 +G G+G + A+ G G VLP A +P VPG G G +A G P Sbjct: 251 TGTGVGPQAAAAAAAKAAAKFGAGAAG---VLPGVGGAGVPGVPGAIPGIGGIAGVGTPA 307 Query: 72 LA 73 A Sbjct: 308 AA 309 >gi|126352700 elastin isoform b precursor [Homo sapiens] Length = 677 Score = 29.6 bits (65), Expect = 3.3 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%) Query: 12 SGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRGPGELAKYGLPG 71 +G G+G + A+ G G VLP A +P VPG G G +A G P Sbjct: 236 TGTGVGPQAAAAAAAKAAAKFGAGAAG---VLPGVGGAGVPGVPGAIPGIGGIAGVGTPA 292 Query: 72 LA 73 A Sbjct: 293 AA 294 >gi|126352440 elastin isoform a precursor [Homo sapiens] Length = 724 Score = 29.6 bits (65), Expect = 3.3 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%) Query: 12 SGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRGPGELAKYGLPG 71 +G G+G + A+ G G VLP A +P VPG G G +A G P Sbjct: 246 TGTGVGPQAAAAAAAKAAAKFGAGAAG---VLPGVGGAGVPGVPGAIPGIGGIAGVGTPA 302 Query: 72 LA 73 A Sbjct: 303 AA 304 >gi|18426973 DR1-associated protein 1 [Homo sapiens] Length = 205 Score = 29.6 bits (65), Expect = 3.3 Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 41 PVLPVAAAAELPPVPGGPRGPGE 63 P LP A+ LPP P GP P E Sbjct: 175 PFLPFASTLPLPPAPPGPSAPDE 197 >gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo sapiens] Length = 1424 Score = 29.6 bits (65), Expect = 3.3 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 10/51 (19%) Query: 34 PGLLGRLPVLPVAAAAELPPVPGGPRGPG---------ELAKYGLPGLAQL 75 PGL G+ P LP A +PGGP PG E + GLPGL L Sbjct: 729 PGLPGK-PGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGL 778 Score = 28.1 bits (61), Expect = 9.7 Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 10/53 (18%) Query: 30 ARAAPGLLGRLPVLPVAAAAELPPVPGGPRG----------PGELAKYGLPGL 72 A PG G L V+ PP P GP G PG L K G PGL Sbjct: 635 APGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGL 687 >gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo sapiens] Length = 1494 Score = 29.6 bits (65), Expect = 3.3 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 10/51 (19%) Query: 34 PGLLGRLPVLPVAAAAELPPVPGGPRGPG---------ELAKYGLPGLAQL 75 PGL G+ P LP A +PGGP PG E + GLPGL L Sbjct: 729 PGLPGK-PGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGL 778 Score = 28.1 bits (61), Expect = 9.7 Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 10/53 (18%) Query: 30 ARAAPGLLGRLPVLPVAAAAELPPVPGGPRG----------PGELAKYGLPGL 72 A PG G L V+ PP P GP G PG L K G PGL Sbjct: 635 APGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGL 687 >gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo sapiens] Length = 1637 Score = 29.6 bits (65), Expect = 3.3 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 10/51 (19%) Query: 34 PGLLGRLPVLPVAAAAELPPVPGGPRGPG---------ELAKYGLPGLAQL 75 PGL G+ P LP A +PGGP PG E + GLPGL L Sbjct: 729 PGLPGK-PGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGL 778 Score = 28.1 bits (61), Expect = 9.7 Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 10/53 (18%) Query: 30 ARAAPGLLGRLPVLPVAAAAELPPVPGGPRG----------PGELAKYGLPGL 72 A PG G L V+ PP P GP G PG L K G PGL Sbjct: 635 APGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGL 687 >gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo sapiens] Length = 1670 Score = 29.6 bits (65), Expect = 3.3 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 10/51 (19%) Query: 34 PGLLGRLPVLPVAAAAELPPVPGGPRGPG---------ELAKYGLPGLAQL 75 PGL G+ P LP A +PGGP PG E + GLPGL L Sbjct: 729 PGLPGK-PGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGL 778 Score = 28.1 bits (61), Expect = 9.7 Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 10/53 (18%) Query: 30 ARAAPGLLGRLPVLPVAAAAELPPVPGGPRG----------PGELAKYGLPGL 72 A PG G L V+ PP P GP G PG L K G PGL Sbjct: 635 APGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGL 687 >gi|148225659 endonuclease domain containing 1 [Homo sapiens] Length = 500 Score = 29.6 bits (65), Expect = 3.3 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 7/77 (9%) Query: 126 RATNADYRGSGFDRGHLAAAANHRWSQKAMDDTFYLSNVAPQVPHLNQNAWNNLEK-YSR 184 +A N DY S + RG L + S TF L+N AP + + NL R Sbjct: 128 QALNTDYLDSDYQRGQLYPFS---LSSDVQVATFTLTNSAPMTQSFQERWYVNLHSLMDR 184 Query: 185 SLT---RSYQNVYVCTG 198 +LT S +++Y+ TG Sbjct: 185 ALTPQCGSGEDLYILTG 201 >gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo sapiens] Length = 1691 Score = 29.3 bits (64), Expect = 4.4 Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Query: 31 RAAPGLLGRL--PVLPVAAAAELPPVPGGPRG-PGELAKYGLPGLAQLKSRESYVL-CYD 86 + PGL G P P LP +PG PRG PG+ K GLPG L + L C Sbjct: 601 KGLPGLPGEKGHPGPPGLPGNGLPGLPG-PRGLPGDKGKDGLPGQQGLPGSKGITLPCII 659 Query: 87 PRTRG 91 P + G Sbjct: 660 PGSYG 664 >gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo sapiens] Length = 1690 Score = 29.3 bits (64), Expect = 4.4 Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Query: 31 RAAPGLLGRL--PVLPVAAAAELPPVPGGPRG-PGELAKYGLPGLAQLKSRESYVL-CYD 86 + PGL G P P LP +PG PRG PG+ K GLPG L + L C Sbjct: 600 KGLPGLPGEKGHPGPPGLPGNGLPGLPG-PRGLPGDKGKDGLPGQQGLPGSKGITLPCII 658 Query: 87 PRTRG 91 P + G Sbjct: 659 PGSYG 663 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.319 0.137 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,547,955 Number of Sequences: 37866 Number of extensions: 641334 Number of successful extensions: 3173 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 51 Number of HSP's that attempted gapping in prelim test: 2878 Number of HSP's gapped (non-prelim): 367 length of query: 297 length of database: 18,247,518 effective HSP length: 102 effective length of query: 195 effective length of database: 14,385,186 effective search space: 2805111270 effective search space used: 2805111270 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.