Guide to the Human Genome
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Search of human proteins with 53759134

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|53759134 endonuclease G precursor [Homo sapiens]
         (297 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|53759134 endonuclease G precursor [Homo sapiens]                   602   e-172
gi|224451073 endo/exonuclease (5'-3'), endonuclease G-like isofo...   179   3e-45
gi|224451075 endo/exonuclease (5'-3'), endonuclease G-like isofo...   163   2e-40
gi|4503727 FK506 binding protein 3, 25kDa [Homo sapiens]               34   0.14 
gi|7710129 LIM domain only 6 [Homo sapiens]                            33   0.23 
gi|54607086 eukaryotic elongation factor, selenocysteine-tRNA-sp...    32   0.88 
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      31   1.1  
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]           31   1.1  
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]     30   2.0  
gi|91208420 bassoon protein [Homo sapiens]                             30   2.0  
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    30   2.6  
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho...    30   2.6  
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho...    30   2.6  
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      30   2.6  
gi|17402888 neuronal pentraxin receptor [Homo sapiens]                 30   2.6  
gi|239756268 PREDICTED: hypothetical protein XP_002344877 [Homo ...    30   2.6  
gi|239745177 PREDICTED: hypothetical protein XP_002343381 [Homo ...    30   2.6  
gi|126352608 elastin isoform e precursor [Homo sapiens]                30   3.3  
gi|126352446 elastin isoform d precursor [Homo sapiens]                30   3.3  
gi|126352322 elastin isoform c precursor [Homo sapiens]                30   3.3  
gi|126352700 elastin isoform b precursor [Homo sapiens]                30   3.3  
gi|126352440 elastin isoform a precursor [Homo sapiens]                30   3.3  
gi|18426973 DR1-associated protein 1 [Homo sapiens]                    30   3.3  
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s...    30   3.3  
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s...    30   3.3  
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s...    30   3.3  
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s...    30   3.3  
gi|148225659 endonuclease domain containing 1 [Homo sapiens]           30   3.3  
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ...    29   4.4  
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s...    29   4.4  

>gi|53759134 endonuclease G precursor [Homo sapiens]
          Length = 297

 Score =  602 bits (1553), Expect = e-172
 Identities = 297/297 (100%), Positives = 297/297 (100%)

Query: 1   MRALRAGLTLASGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRG 60
           MRALRAGLTLASGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRG
Sbjct: 1   MRALRAGLTLASGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRG 60

Query: 61  PGELAKYGLPGLAQLKSRESYVLCYDPRTRGALWVVEQLRPERLRGDGDRRECDFREDDS 120
           PGELAKYGLPGLAQLKSRESYVLCYDPRTRGALWVVEQLRPERLRGDGDRRECDFREDDS
Sbjct: 61  PGELAKYGLPGLAQLKSRESYVLCYDPRTRGALWVVEQLRPERLRGDGDRRECDFREDDS 120

Query: 121 VHAYHRATNADYRGSGFDRGHLAAAANHRWSQKAMDDTFYLSNVAPQVPHLNQNAWNNLE 180
           VHAYHRATNADYRGSGFDRGHLAAAANHRWSQKAMDDTFYLSNVAPQVPHLNQNAWNNLE
Sbjct: 121 VHAYHRATNADYRGSGFDRGHLAAAANHRWSQKAMDDTFYLSNVAPQVPHLNQNAWNNLE 180

Query: 181 KYSRSLTRSYQNVYVCTGPLFLPRTEADGKSYVKYQVIGKNHVAVPTHFFKVLILEAAGG 240
           KYSRSLTRSYQNVYVCTGPLFLPRTEADGKSYVKYQVIGKNHVAVPTHFFKVLILEAAGG
Sbjct: 181 KYSRSLTRSYQNVYVCTGPLFLPRTEADGKSYVKYQVIGKNHVAVPTHFFKVLILEAAGG 240

Query: 241 QIELRTYVMPNAPVDEAIPLERFLVPIESIERASGLLFVPNILARAGSLKAITAGSK 297
           QIELRTYVMPNAPVDEAIPLERFLVPIESIERASGLLFVPNILARAGSLKAITAGSK
Sbjct: 241 QIELRTYVMPNAPVDEAIPLERFLVPIESIERASGLLFVPNILARAGSLKAITAGSK 297


>gi|224451073 endo/exonuclease (5'-3'), endonuclease G-like isoform
           1 precursor [Homo sapiens]
          Length = 368

 Score =  179 bits (454), Expect = 3e-45
 Identities = 90/232 (38%), Positives = 136/232 (58%), Gaps = 4/232 (1%)

Query: 55  PGGPRGPGELAKYGLPGLA-QLKSRESYVLCYDPRTRGALWVVEQLRPERLRGDGDRREC 113
           P G      L ++G P    + +   ++ L YD   R   WV+E +   ++ GD DR+ C
Sbjct: 53  PDGSAEKAVLEQFGFPLTGTEARCYTNHALSYDQAKRVPRWVLEHISKSKIMGDADRKHC 112

Query: 114 DFREDDSVHAYHRATNADYRGSGFDRGHLAAAANHRWSQKAMDDTFYLSNVAPQVPHLNQ 173
            F+ D ++     A N DY GSG+ RGH+A A N+++S KAM +TFYLSN+ PQ    N 
Sbjct: 113 KFKPDPNIPPTFSAFNEDYVGSGWSRGHMAPAGNNKFSSKAMAETFYLSNIVPQDFDNNS 172

Query: 174 NAWNNLEKYSRSLTRSYQNVYVCTGPLFLPRTEADGKSYVKYQVIGKNHVAVPTHFFKVL 233
             WN +E Y R LT  +++V+V +GPL LP+T  DGK  V YQVIG+++VAVP+H +KV+
Sbjct: 173 GYWNRIEMYCRELTERFEDVWVVSGPLTLPQTRGDGKKIVSYQVIGEDNVAVPSHLYKVI 232

Query: 234 ILEAAGGQIE---LRTYVMPNAPVDEAIPLERFLVPIESIERASGLLFVPNI 282
           +   +    E   L  +V+PN  +     L  F V ++ +E+ SGL+F P++
Sbjct: 233 LARRSSVSTEPLALGAFVVPNEAIGFQPQLTEFQVSLQDLEKLSGLVFFPHL 284


>gi|224451075 endo/exonuclease (5'-3'), endonuclease G-like isoform
           2 precursor [Homo sapiens]
          Length = 318

 Score =  163 bits (412), Expect = 2e-40
 Identities = 82/198 (41%), Positives = 123/198 (62%), Gaps = 6/198 (3%)

Query: 88  RTRGALWVVEQLRPERLRGDGDRRECDFREDDSVHAYHRATNADYRGSGFDRGHLAAAAN 147
           R++GA   +   +P+   GD DR+ C F+ D ++     A N DY GSG+ RGH+A A N
Sbjct: 40  RSQGAEGALTGKQPD---GDADRKHCKFKPDPNIPPTFSAFNEDYVGSGWSRGHMAPAGN 96

Query: 148 HRWSQKAMDDTFYLSNVAPQVPHLNQNAWNNLEKYSRSLTRSYQNVYVCTGPLFLPRTEA 207
           +++S KAM +TFYLSN+ PQ    N   WN +E Y R LT  +++V+V +GPL LP+T  
Sbjct: 97  NKFSSKAMAETFYLSNIVPQDFDNNSGYWNRIEMYCRELTERFEDVWVVSGPLTLPQTRG 156

Query: 208 DGKSYVKYQVIGKNHVAVPTHFFKVLILEAAGGQIE---LRTYVMPNAPVDEAIPLERFL 264
           DGK  V YQVIG+++VAVP+H +KV++   +    E   L  +V+PN  +     L  F 
Sbjct: 157 DGKKIVSYQVIGEDNVAVPSHLYKVILARRSSVSTEPLALGAFVVPNEAIGFQPQLTEFQ 216

Query: 265 VPIESIERASGLLFVPNI 282
           V ++ +E+ SGL+F P++
Sbjct: 217 VSLQDLEKLSGLVFFPHL 234


>gi|4503727 FK506 binding protein 3, 25kDa [Homo sapiens]
          Length = 224

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 94  WVVEQLRPERLRGDGDRRECDFREDDSVHAYHRAT-NADYRGSGFDRGHLAAAANHRWSQ 152
           W VEQLR E+L      +       DS  A H+   N        ++ HL  A NH +  
Sbjct: 10  WTVEQLRSEQLPKKDIIKFLQEHGSDSFLAEHKLLGNIKNVAKTANKDHLVTAYNHLFET 69

Query: 153 KAMDDTFYLSNVAPQVPHLNQN 174
           K    T  +S V+ QV ++  N
Sbjct: 70  KRFKGTESISKVSEQVKNVKLN 91


>gi|7710129 LIM domain only 6 [Homo sapiens]
          Length = 615

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 11/140 (7%)

Query: 40  LPVLPVAAAAELPPV-PGGPRGPGELAKYGLPGLAQLKSRESYVLCYDPRTRGALWVVEQ 98
           +P L + +  E PP  PG P    + + +G     ++  R+  V    PR   +    ++
Sbjct: 438 MPELGLRSVPEPPPESPGQPNLRPDDSAFGRQSTPRVSFRDPLVSEGGPRRTLSAPPAQR 497

Query: 99  LRPERLRGDGDRRECDFREDDSVHAYHRATNADYR-------GSGFDRGHLAAAANHRWS 151
            RP   R    R     R     H +H   +   R       GSG D    +++ +   S
Sbjct: 498 RRP---RSPPPRAPSRRRHHHHNHHHHHNRHPSRRRHYQCDAGSGSDSESCSSSPSSSSS 554

Query: 152 QKAMDDTFYLSNVAPQVPHL 171
           + + DD F+L    P  PHL
Sbjct: 555 ESSEDDGFFLGERIPLPPHL 574


>gi|54607086 eukaryotic elongation factor,
           selenocysteine-tRNA-specific [Homo sapiens]
          Length = 596

 Score = 31.6 bits (70), Expect = 0.88
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 41  PVLPVAAAAELPPVPGGPRGPGELAKYGLPGLAQLKSRESYVLCYDP 87
           P++PVAA       PGGP  P   A  G+P L +L + +  +   DP
Sbjct: 180 PIIPVAAK------PGGPEAPETEAPQGIPELIELLTSQISIPTRDP 220


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 30  ARAAPGLLGRLPVLPVAAAAELPPVPGGPRGP-GELAKYGLPG 71
           A  APG+ G  P  P A     P  PGGP GP G   + G PG
Sbjct: 399 ANGAPGIAGA-PGFPGARGPSGPQGPGGPPGPKGNSGEPGAPG 440


>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
          Length = 680

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 33  APGLLGR--LPVLPVAAAAELPPVPGGPRGPGELAKYGLPG 71
           +PGL G   LP  P  +A   P VPG P  PGE   YG  G
Sbjct: 87  SPGLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKG 127



 Score = 28.9 bits (63), Expect = 5.7
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 9/60 (15%)

Query: 41  PVLPVAAAAELPPVPG--------GPRG-PGELAKYGLPGLAQLKSRESYVLCYDPRTRG 91
           P +P  A   +P  PG        GPRG PGE    G+PG+   K    Y     P  RG
Sbjct: 144 PGIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERG 203



 Score = 28.1 bits (61), Expect = 9.7
 Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 34  PGLLGRLPVLPVAAAAELPPVPG--GPRGPGELAKYGLPGL 72
           PG  G      +     LP  PG  GP GP    K GLPGL
Sbjct: 266 PGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGL 306


>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
          Length = 1669

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 30  ARAAPGLLGR--LPVLPVAAAAELPPVPGGPRGPGELAKYGLPG 71
           A+  PG+ G+  LP LP    A  P +PG P   GE+   G PG
Sbjct: 847 AQGLPGITGQSGLPGLPGQQGA--PGIPGFPGSKGEMGVMGTPG 888



 Score = 28.1 bits (61), Expect = 9.7
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 34  PGLLGRL--PVLPVAAAAELPPVPGGPRGPGELAKYGLPGL 72
           PG+ G+   P + +     LP +PG P  PGE    G+PG+
Sbjct: 725 PGVQGQKGEPGVGLPGLKGLPGLPGIPGTPGEKGSIGVPGV 765


>gi|91208420 bassoon protein [Homo sapiens]
          Length = 3926

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 32 AAPGLLGRLPVLPVAAAAELPPVPGGPRGPG 62
          +AP   G+LP    A +  +PPVPG   GPG
Sbjct: 38 SAPAGGGQLPAAGAARSTAVPPVPGPGPGPG 68


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
            sapiens]
          Length = 1818

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 8/55 (14%)

Query: 28   EDARAAPGLLGRLPVLPVAAAAELPPVPGGPRG-------PGELAKYGLPGLAQL 75
            E  R  PG +G    LP AA  + PP P GP G       PG   + G PGL  L
Sbjct: 1419 EGLRGIPGPVGEQG-LPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGL 1472


>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
            sapiens]
          Length = 1767

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 8/55 (14%)

Query: 28   EDARAAPGLLGRLPVLPVAAAAELPPVPGGPRG-------PGELAKYGLPGLAQL 75
            E  R  PG +G    LP AA  + PP P GP G       PG   + G PGL  L
Sbjct: 1368 EGLRGIPGPVGEQG-LPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGL 1421


>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
            sapiens]
          Length = 1806

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 8/55 (14%)

Query: 28   EDARAAPGLLGRLPVLPVAAAAELPPVPGGPRG-------PGELAKYGLPGLAQL 75
            E  R  PG +G    LP AA  + PP P GP G       PG   + G PGL  L
Sbjct: 1407 EGLRGIPGPVGEQG-LPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGL 1460


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 24  RRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRG-PGELAKYGLPGLAQLKSRE 79
           R   +    APGL G    LP    A   P P GPRG PGE  + GLPG A  +  +
Sbjct: 271 RNGEKGETGAPGLKGENG-LPGENGA---PGPMGPRGAPGERGRPGLPGAAGARGND 323


>gi|17402888 neuronal pentraxin receptor [Homo sapiens]
          Length = 500

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 2  RALRAGLTLASGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGP 58
          RAL  G   AS A   A   G +R       A G  G  P LP A AA   P+P GP
Sbjct: 34 RALPGGADNASVASGAAASPGPQRSLSALHGAGGSAGP-PALPGAPAASAHPLPPGP 89


>gi|239756268 PREDICTED: hypothetical protein XP_002344877 [Homo
           sapiens]
          Length = 252

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 11/78 (14%)

Query: 5   RAGLTLASGAGLGAVVEGWRRRREDARA----------APGLLGRLPVLPVAAAAELPPV 54
           RAG   A G  L  V E WR R+ +A A          APG    LP  P+  AA    +
Sbjct: 106 RAGGNRAYGRELLQVAEVWRIRQREAGAARAARAPKPPAPGSGQALPADPLLQAA-ASTL 164

Query: 55  PGGPRGPGELAKYGLPGL 72
            G PR P      G  GL
Sbjct: 165 AGRPRAPPPAPAAGQRGL 182


>gi|239745177 PREDICTED: hypothetical protein XP_002343381 [Homo
           sapiens]
          Length = 252

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 11/78 (14%)

Query: 5   RAGLTLASGAGLGAVVEGWRRRREDARA----------APGLLGRLPVLPVAAAAELPPV 54
           RAG   A G  L  V E WR R+ +A A          APG    LP  P+  AA    +
Sbjct: 106 RAGGNRAYGRELLQVAEVWRIRQREAGAAGAARAPKPPAPGSGQALPADPLLQAA-ASTL 164

Query: 55  PGGPRGPGELAKYGLPGL 72
            G PR P      G  GL
Sbjct: 165 AGRPRAPPPAPAAGQRGL 182


>gi|126352608 elastin isoform e precursor [Homo sapiens]
          Length = 705

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 12  SGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRGPGELAKYGLPG 71
           +G G+G         +  A+   G  G   VLP    A +P VPG   G G +A  G P 
Sbjct: 246 TGTGVGPQAAAAAAAKAAAKFGAGAAG---VLPGVGGAGVPGVPGAIPGIGGIAGVGTPA 302

Query: 72  LA 73
            A
Sbjct: 303 AA 304


>gi|126352446 elastin isoform d precursor [Homo sapiens]
          Length = 711

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 12  SGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRGPGELAKYGLPG 71
           +G G+G         +  A+   G  G   VLP    A +P VPG   G G +A  G P 
Sbjct: 251 TGTGVGPQAAAAAAAKAAAKFGAGAAG---VLPGVGGAGVPGVPGAIPGIGGIAGVGTPA 307

Query: 72  LA 73
            A
Sbjct: 308 AA 309


>gi|126352322 elastin isoform c precursor [Homo sapiens]
          Length = 692

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 12  SGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRGPGELAKYGLPG 71
           +G G+G         +  A+   G  G   VLP    A +P VPG   G G +A  G P 
Sbjct: 251 TGTGVGPQAAAAAAAKAAAKFGAGAAG---VLPGVGGAGVPGVPGAIPGIGGIAGVGTPA 307

Query: 72  LA 73
            A
Sbjct: 308 AA 309


>gi|126352700 elastin isoform b precursor [Homo sapiens]
          Length = 677

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 12  SGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRGPGELAKYGLPG 71
           +G G+G         +  A+   G  G   VLP    A +P VPG   G G +A  G P 
Sbjct: 236 TGTGVGPQAAAAAAAKAAAKFGAGAAG---VLPGVGGAGVPGVPGAIPGIGGIAGVGTPA 292

Query: 72  LA 73
            A
Sbjct: 293 AA 294


>gi|126352440 elastin isoform a precursor [Homo sapiens]
          Length = 724

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 12  SGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRGPGELAKYGLPG 71
           +G G+G         +  A+   G  G   VLP    A +P VPG   G G +A  G P 
Sbjct: 246 TGTGVGPQAAAAAAAKAAAKFGAGAAG---VLPGVGGAGVPGVPGAIPGIGGIAGVGTPA 302

Query: 72  LA 73
            A
Sbjct: 303 AA 304


>gi|18426973 DR1-associated protein 1 [Homo sapiens]
          Length = 205

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 41  PVLPVAAAAELPPVPGGPRGPGE 63
           P LP A+   LPP P GP  P E
Sbjct: 175 PFLPFASTLPLPPAPPGPSAPDE 197


>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
           sapiens]
          Length = 1424

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 10/51 (19%)

Query: 34  PGLLGRLPVLPVAAAAELPPVPGGPRGPG---------ELAKYGLPGLAQL 75
           PGL G+ P LP A       +PGGP  PG         E  + GLPGL  L
Sbjct: 729 PGLPGK-PGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGL 778



 Score = 28.1 bits (61), Expect = 9.7
 Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 10/53 (18%)

Query: 30  ARAAPGLLGRLPVLPVAAAAELPPVPGGPRG----------PGELAKYGLPGL 72
           A   PG  G    L V+     PP P GP G          PG L K G PGL
Sbjct: 635 APGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGL 687


>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
           sapiens]
          Length = 1494

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 10/51 (19%)

Query: 34  PGLLGRLPVLPVAAAAELPPVPGGPRGPG---------ELAKYGLPGLAQL 75
           PGL G+ P LP A       +PGGP  PG         E  + GLPGL  L
Sbjct: 729 PGLPGK-PGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGL 778



 Score = 28.1 bits (61), Expect = 9.7
 Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 10/53 (18%)

Query: 30  ARAAPGLLGRLPVLPVAAAAELPPVPGGPRG----------PGELAKYGLPGL 72
           A   PG  G    L V+     PP P GP G          PG L K G PGL
Sbjct: 635 APGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGL 687


>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
           sapiens]
          Length = 1637

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 10/51 (19%)

Query: 34  PGLLGRLPVLPVAAAAELPPVPGGPRGPG---------ELAKYGLPGLAQL 75
           PGL G+ P LP A       +PGGP  PG         E  + GLPGL  L
Sbjct: 729 PGLPGK-PGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGL 778



 Score = 28.1 bits (61), Expect = 9.7
 Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 10/53 (18%)

Query: 30  ARAAPGLLGRLPVLPVAAAAELPPVPGGPRG----------PGELAKYGLPGL 72
           A   PG  G    L V+     PP P GP G          PG L K G PGL
Sbjct: 635 APGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGL 687


>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
           sapiens]
          Length = 1670

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 10/51 (19%)

Query: 34  PGLLGRLPVLPVAAAAELPPVPGGPRGPG---------ELAKYGLPGLAQL 75
           PGL G+ P LP A       +PGGP  PG         E  + GLPGL  L
Sbjct: 729 PGLPGK-PGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGL 778



 Score = 28.1 bits (61), Expect = 9.7
 Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 10/53 (18%)

Query: 30  ARAAPGLLGRLPVLPVAAAAELPPVPGGPRG----------PGELAKYGLPGL 72
           A   PG  G    L V+     PP P GP G          PG L K G PGL
Sbjct: 635 APGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGL 687


>gi|148225659 endonuclease domain containing 1 [Homo sapiens]
          Length = 500

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 7/77 (9%)

Query: 126 RATNADYRGSGFDRGHLAAAANHRWSQKAMDDTFYLSNVAPQVPHLNQNAWNNLEK-YSR 184
           +A N DY  S + RG L   +    S      TF L+N AP      +  + NL     R
Sbjct: 128 QALNTDYLDSDYQRGQLYPFS---LSSDVQVATFTLTNSAPMTQSFQERWYVNLHSLMDR 184

Query: 185 SLT---RSYQNVYVCTG 198
           +LT    S +++Y+ TG
Sbjct: 185 ALTPQCGSGEDLYILTG 201


>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
           sapiens]
          Length = 1691

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 31  RAAPGLLGRL--PVLPVAAAAELPPVPGGPRG-PGELAKYGLPGLAQLKSRESYVL-CYD 86
           +  PGL G    P  P      LP +PG PRG PG+  K GLPG   L   +   L C  
Sbjct: 601 KGLPGLPGEKGHPGPPGLPGNGLPGLPG-PRGLPGDKGKDGLPGQQGLPGSKGITLPCII 659

Query: 87  PRTRG 91
           P + G
Sbjct: 660 PGSYG 664


>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
           sapiens]
          Length = 1690

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 31  RAAPGLLGRL--PVLPVAAAAELPPVPGGPRG-PGELAKYGLPGLAQLKSRESYVL-CYD 86
           +  PGL G    P  P      LP +PG PRG PG+  K GLPG   L   +   L C  
Sbjct: 600 KGLPGLPGEKGHPGPPGLPGNGLPGLPG-PRGLPGDKGKDGLPGQQGLPGSKGITLPCII 658

Query: 87  PRTRG 91
           P + G
Sbjct: 659 PGSYG 663


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,547,955
Number of Sequences: 37866
Number of extensions: 641334
Number of successful extensions: 3173
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 2878
Number of HSP's gapped (non-prelim): 367
length of query: 297
length of database: 18,247,518
effective HSP length: 102
effective length of query: 195
effective length of database: 14,385,186
effective search space: 2805111270
effective search space used: 2805111270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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