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Search of human proteins with 53759134
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|53759134 endonuclease G precursor [Homo sapiens]
(297 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|53759134 endonuclease G precursor [Homo sapiens] 602 e-172
gi|224451073 endo/exonuclease (5'-3'), endonuclease G-like isofo... 179 3e-45
gi|224451075 endo/exonuclease (5'-3'), endonuclease G-like isofo... 163 2e-40
gi|4503727 FK506 binding protein 3, 25kDa [Homo sapiens] 34 0.14
gi|7710129 LIM domain only 6 [Homo sapiens] 33 0.23
gi|54607086 eukaryotic elongation factor, selenocysteine-tRNA-sp... 32 0.88
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 31 1.1
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 31 1.1
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 30 2.0
gi|91208420 bassoon protein [Homo sapiens] 30 2.0
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 30 2.6
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 30 2.6
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 30 2.6
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 30 2.6
gi|17402888 neuronal pentraxin receptor [Homo sapiens] 30 2.6
gi|239756268 PREDICTED: hypothetical protein XP_002344877 [Homo ... 30 2.6
gi|239745177 PREDICTED: hypothetical protein XP_002343381 [Homo ... 30 2.6
gi|126352608 elastin isoform e precursor [Homo sapiens] 30 3.3
gi|126352446 elastin isoform d precursor [Homo sapiens] 30 3.3
gi|126352322 elastin isoform c precursor [Homo sapiens] 30 3.3
gi|126352700 elastin isoform b precursor [Homo sapiens] 30 3.3
gi|126352440 elastin isoform a precursor [Homo sapiens] 30 3.3
gi|18426973 DR1-associated protein 1 [Homo sapiens] 30 3.3
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 30 3.3
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 30 3.3
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 30 3.3
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 30 3.3
gi|148225659 endonuclease domain containing 1 [Homo sapiens] 30 3.3
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 29 4.4
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 29 4.4
>gi|53759134 endonuclease G precursor [Homo sapiens]
Length = 297
Score = 602 bits (1553), Expect = e-172
Identities = 297/297 (100%), Positives = 297/297 (100%)
Query: 1 MRALRAGLTLASGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRG 60
MRALRAGLTLASGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRG
Sbjct: 1 MRALRAGLTLASGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRG 60
Query: 61 PGELAKYGLPGLAQLKSRESYVLCYDPRTRGALWVVEQLRPERLRGDGDRRECDFREDDS 120
PGELAKYGLPGLAQLKSRESYVLCYDPRTRGALWVVEQLRPERLRGDGDRRECDFREDDS
Sbjct: 61 PGELAKYGLPGLAQLKSRESYVLCYDPRTRGALWVVEQLRPERLRGDGDRRECDFREDDS 120
Query: 121 VHAYHRATNADYRGSGFDRGHLAAAANHRWSQKAMDDTFYLSNVAPQVPHLNQNAWNNLE 180
VHAYHRATNADYRGSGFDRGHLAAAANHRWSQKAMDDTFYLSNVAPQVPHLNQNAWNNLE
Sbjct: 121 VHAYHRATNADYRGSGFDRGHLAAAANHRWSQKAMDDTFYLSNVAPQVPHLNQNAWNNLE 180
Query: 181 KYSRSLTRSYQNVYVCTGPLFLPRTEADGKSYVKYQVIGKNHVAVPTHFFKVLILEAAGG 240
KYSRSLTRSYQNVYVCTGPLFLPRTEADGKSYVKYQVIGKNHVAVPTHFFKVLILEAAGG
Sbjct: 181 KYSRSLTRSYQNVYVCTGPLFLPRTEADGKSYVKYQVIGKNHVAVPTHFFKVLILEAAGG 240
Query: 241 QIELRTYVMPNAPVDEAIPLERFLVPIESIERASGLLFVPNILARAGSLKAITAGSK 297
QIELRTYVMPNAPVDEAIPLERFLVPIESIERASGLLFVPNILARAGSLKAITAGSK
Sbjct: 241 QIELRTYVMPNAPVDEAIPLERFLVPIESIERASGLLFVPNILARAGSLKAITAGSK 297
>gi|224451073 endo/exonuclease (5'-3'), endonuclease G-like isoform
1 precursor [Homo sapiens]
Length = 368
Score = 179 bits (454), Expect = 3e-45
Identities = 90/232 (38%), Positives = 136/232 (58%), Gaps = 4/232 (1%)
Query: 55 PGGPRGPGELAKYGLPGLA-QLKSRESYVLCYDPRTRGALWVVEQLRPERLRGDGDRREC 113
P G L ++G P + + ++ L YD R WV+E + ++ GD DR+ C
Sbjct: 53 PDGSAEKAVLEQFGFPLTGTEARCYTNHALSYDQAKRVPRWVLEHISKSKIMGDADRKHC 112
Query: 114 DFREDDSVHAYHRATNADYRGSGFDRGHLAAAANHRWSQKAMDDTFYLSNVAPQVPHLNQ 173
F+ D ++ A N DY GSG+ RGH+A A N+++S KAM +TFYLSN+ PQ N
Sbjct: 113 KFKPDPNIPPTFSAFNEDYVGSGWSRGHMAPAGNNKFSSKAMAETFYLSNIVPQDFDNNS 172
Query: 174 NAWNNLEKYSRSLTRSYQNVYVCTGPLFLPRTEADGKSYVKYQVIGKNHVAVPTHFFKVL 233
WN +E Y R LT +++V+V +GPL LP+T DGK V YQVIG+++VAVP+H +KV+
Sbjct: 173 GYWNRIEMYCRELTERFEDVWVVSGPLTLPQTRGDGKKIVSYQVIGEDNVAVPSHLYKVI 232
Query: 234 ILEAAGGQIE---LRTYVMPNAPVDEAIPLERFLVPIESIERASGLLFVPNI 282
+ + E L +V+PN + L F V ++ +E+ SGL+F P++
Sbjct: 233 LARRSSVSTEPLALGAFVVPNEAIGFQPQLTEFQVSLQDLEKLSGLVFFPHL 284
>gi|224451075 endo/exonuclease (5'-3'), endonuclease G-like isoform
2 precursor [Homo sapiens]
Length = 318
Score = 163 bits (412), Expect = 2e-40
Identities = 82/198 (41%), Positives = 123/198 (62%), Gaps = 6/198 (3%)
Query: 88 RTRGALWVVEQLRPERLRGDGDRRECDFREDDSVHAYHRATNADYRGSGFDRGHLAAAAN 147
R++GA + +P+ GD DR+ C F+ D ++ A N DY GSG+ RGH+A A N
Sbjct: 40 RSQGAEGALTGKQPD---GDADRKHCKFKPDPNIPPTFSAFNEDYVGSGWSRGHMAPAGN 96
Query: 148 HRWSQKAMDDTFYLSNVAPQVPHLNQNAWNNLEKYSRSLTRSYQNVYVCTGPLFLPRTEA 207
+++S KAM +TFYLSN+ PQ N WN +E Y R LT +++V+V +GPL LP+T
Sbjct: 97 NKFSSKAMAETFYLSNIVPQDFDNNSGYWNRIEMYCRELTERFEDVWVVSGPLTLPQTRG 156
Query: 208 DGKSYVKYQVIGKNHVAVPTHFFKVLILEAAGGQIE---LRTYVMPNAPVDEAIPLERFL 264
DGK V YQVIG+++VAVP+H +KV++ + E L +V+PN + L F
Sbjct: 157 DGKKIVSYQVIGEDNVAVPSHLYKVILARRSSVSTEPLALGAFVVPNEAIGFQPQLTEFQ 216
Query: 265 VPIESIERASGLLFVPNI 282
V ++ +E+ SGL+F P++
Sbjct: 217 VSLQDLEKLSGLVFFPHL 234
>gi|4503727 FK506 binding protein 3, 25kDa [Homo sapiens]
Length = 224
Score = 34.3 bits (77), Expect = 0.14
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 94 WVVEQLRPERLRGDGDRRECDFREDDSVHAYHRAT-NADYRGSGFDRGHLAAAANHRWSQ 152
W VEQLR E+L + DS A H+ N ++ HL A NH +
Sbjct: 10 WTVEQLRSEQLPKKDIIKFLQEHGSDSFLAEHKLLGNIKNVAKTANKDHLVTAYNHLFET 69
Query: 153 KAMDDTFYLSNVAPQVPHLNQN 174
K T +S V+ QV ++ N
Sbjct: 70 KRFKGTESISKVSEQVKNVKLN 91
>gi|7710129 LIM domain only 6 [Homo sapiens]
Length = 615
Score = 33.5 bits (75), Expect = 0.23
Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 11/140 (7%)
Query: 40 LPVLPVAAAAELPPV-PGGPRGPGELAKYGLPGLAQLKSRESYVLCYDPRTRGALWVVEQ 98
+P L + + E PP PG P + + +G ++ R+ V PR + ++
Sbjct: 438 MPELGLRSVPEPPPESPGQPNLRPDDSAFGRQSTPRVSFRDPLVSEGGPRRTLSAPPAQR 497
Query: 99 LRPERLRGDGDRRECDFREDDSVHAYHRATNADYR-------GSGFDRGHLAAAANHRWS 151
RP R R R H +H + R GSG D +++ + S
Sbjct: 498 RRP---RSPPPRAPSRRRHHHHNHHHHHNRHPSRRRHYQCDAGSGSDSESCSSSPSSSSS 554
Query: 152 QKAMDDTFYLSNVAPQVPHL 171
+ + DD F+L P PHL
Sbjct: 555 ESSEDDGFFLGERIPLPPHL 574
>gi|54607086 eukaryotic elongation factor,
selenocysteine-tRNA-specific [Homo sapiens]
Length = 596
Score = 31.6 bits (70), Expect = 0.88
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 41 PVLPVAAAAELPPVPGGPRGPGELAKYGLPGLAQLKSRESYVLCYDP 87
P++PVAA PGGP P A G+P L +L + + + DP
Sbjct: 180 PIIPVAAK------PGGPEAPETEAPQGIPELIELLTSQISIPTRDP 220
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 31.2 bits (69), Expect = 1.1
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 30 ARAAPGLLGRLPVLPVAAAAELPPVPGGPRGP-GELAKYGLPG 71
A APG+ G P P A P PGGP GP G + G PG
Sbjct: 399 ANGAPGIAGA-PGFPGARGPSGPQGPGGPPGPKGNSGEPGAPG 440
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 31.2 bits (69), Expect = 1.1
Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 33 APGLLGR--LPVLPVAAAAELPPVPGGPRGPGELAKYGLPG 71
+PGL G LP P +A P VPG P PGE YG G
Sbjct: 87 SPGLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKG 127
Score = 28.9 bits (63), Expect = 5.7
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Query: 41 PVLPVAAAAELPPVPG--------GPRG-PGELAKYGLPGLAQLKSRESYVLCYDPRTRG 91
P +P A +P PG GPRG PGE G+PG+ K Y P RG
Sbjct: 144 PGIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERG 203
Score = 28.1 bits (61), Expect = 9.7
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 34 PGLLGRLPVLPVAAAAELPPVPG--GPRGPGELAKYGLPGL 72
PG G + LP PG GP GP K GLPGL
Sbjct: 266 PGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGL 306
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 30.4 bits (67), Expect = 2.0
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 30 ARAAPGLLGR--LPVLPVAAAAELPPVPGGPRGPGELAKYGLPG 71
A+ PG+ G+ LP LP A P +PG P GE+ G PG
Sbjct: 847 AQGLPGITGQSGLPGLPGQQGA--PGIPGFPGSKGEMGVMGTPG 888
Score = 28.1 bits (61), Expect = 9.7
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 34 PGLLGRL--PVLPVAAAAELPPVPGGPRGPGELAKYGLPGL 72
PG+ G+ P + + LP +PG P PGE G+PG+
Sbjct: 725 PGVQGQKGEPGVGLPGLKGLPGLPGIPGTPGEKGSIGVPGV 765
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 30.4 bits (67), Expect = 2.0
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 32 AAPGLLGRLPVLPVAAAAELPPVPGGPRGPG 62
+AP G+LP A + +PPVPG GPG
Sbjct: 38 SAPAGGGQLPAAGAARSTAVPPVPGPGPGPG 68
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 30.0 bits (66), Expect = 2.6
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 28 EDARAAPGLLGRLPVLPVAAAAELPPVPGGPRG-------PGELAKYGLPGLAQL 75
E R PG +G LP AA + PP P GP G PG + G PGL L
Sbjct: 1419 EGLRGIPGPVGEQG-LPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGL 1472
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 30.0 bits (66), Expect = 2.6
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 28 EDARAAPGLLGRLPVLPVAAAAELPPVPGGPRG-------PGELAKYGLPGLAQL 75
E R PG +G LP AA + PP P GP G PG + G PGL L
Sbjct: 1368 EGLRGIPGPVGEQG-LPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGL 1421
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 30.0 bits (66), Expect = 2.6
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 28 EDARAAPGLLGRLPVLPVAAAAELPPVPGGPRG-------PGELAKYGLPGLAQL 75
E R PG +G LP AA + PP P GP G PG + G PGL L
Sbjct: 1407 EGLRGIPGPVGEQG-LPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGL 1460
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 30.0 bits (66), Expect = 2.6
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 24 RRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRG-PGELAKYGLPGLAQLKSRE 79
R + APGL G LP A P P GPRG PGE + GLPG A + +
Sbjct: 271 RNGEKGETGAPGLKGENG-LPGENGA---PGPMGPRGAPGERGRPGLPGAAGARGND 323
>gi|17402888 neuronal pentraxin receptor [Homo sapiens]
Length = 500
Score = 30.0 bits (66), Expect = 2.6
Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 2 RALRAGLTLASGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGP 58
RAL G AS A A G +R A G G P LP A AA P+P GP
Sbjct: 34 RALPGGADNASVASGAAASPGPQRSLSALHGAGGSAGP-PALPGAPAASAHPLPPGP 89
>gi|239756268 PREDICTED: hypothetical protein XP_002344877 [Homo
sapiens]
Length = 252
Score = 30.0 bits (66), Expect = 2.6
Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 11/78 (14%)
Query: 5 RAGLTLASGAGLGAVVEGWRRRREDARA----------APGLLGRLPVLPVAAAAELPPV 54
RAG A G L V E WR R+ +A A APG LP P+ AA +
Sbjct: 106 RAGGNRAYGRELLQVAEVWRIRQREAGAARAARAPKPPAPGSGQALPADPLLQAA-ASTL 164
Query: 55 PGGPRGPGELAKYGLPGL 72
G PR P G GL
Sbjct: 165 AGRPRAPPPAPAAGQRGL 182
>gi|239745177 PREDICTED: hypothetical protein XP_002343381 [Homo
sapiens]
Length = 252
Score = 30.0 bits (66), Expect = 2.6
Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 11/78 (14%)
Query: 5 RAGLTLASGAGLGAVVEGWRRRREDARA----------APGLLGRLPVLPVAAAAELPPV 54
RAG A G L V E WR R+ +A A APG LP P+ AA +
Sbjct: 106 RAGGNRAYGRELLQVAEVWRIRQREAGAAGAARAPKPPAPGSGQALPADPLLQAA-ASTL 164
Query: 55 PGGPRGPGELAKYGLPGL 72
G PR P G GL
Sbjct: 165 AGRPRAPPPAPAAGQRGL 182
>gi|126352608 elastin isoform e precursor [Homo sapiens]
Length = 705
Score = 29.6 bits (65), Expect = 3.3
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 12 SGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRGPGELAKYGLPG 71
+G G+G + A+ G G VLP A +P VPG G G +A G P
Sbjct: 246 TGTGVGPQAAAAAAAKAAAKFGAGAAG---VLPGVGGAGVPGVPGAIPGIGGIAGVGTPA 302
Query: 72 LA 73
A
Sbjct: 303 AA 304
>gi|126352446 elastin isoform d precursor [Homo sapiens]
Length = 711
Score = 29.6 bits (65), Expect = 3.3
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 12 SGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRGPGELAKYGLPG 71
+G G+G + A+ G G VLP A +P VPG G G +A G P
Sbjct: 251 TGTGVGPQAAAAAAAKAAAKFGAGAAG---VLPGVGGAGVPGVPGAIPGIGGIAGVGTPA 307
Query: 72 LA 73
A
Sbjct: 308 AA 309
>gi|126352322 elastin isoform c precursor [Homo sapiens]
Length = 692
Score = 29.6 bits (65), Expect = 3.3
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 12 SGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRGPGELAKYGLPG 71
+G G+G + A+ G G VLP A +P VPG G G +A G P
Sbjct: 251 TGTGVGPQAAAAAAAKAAAKFGAGAAG---VLPGVGGAGVPGVPGAIPGIGGIAGVGTPA 307
Query: 72 LA 73
A
Sbjct: 308 AA 309
>gi|126352700 elastin isoform b precursor [Homo sapiens]
Length = 677
Score = 29.6 bits (65), Expect = 3.3
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 12 SGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRGPGELAKYGLPG 71
+G G+G + A+ G G VLP A +P VPG G G +A G P
Sbjct: 236 TGTGVGPQAAAAAAAKAAAKFGAGAAG---VLPGVGGAGVPGVPGAIPGIGGIAGVGTPA 292
Query: 72 LA 73
A
Sbjct: 293 AA 294
>gi|126352440 elastin isoform a precursor [Homo sapiens]
Length = 724
Score = 29.6 bits (65), Expect = 3.3
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 12 SGAGLGAVVEGWRRRREDARAAPGLLGRLPVLPVAAAAELPPVPGGPRGPGELAKYGLPG 71
+G G+G + A+ G G VLP A +P VPG G G +A G P
Sbjct: 246 TGTGVGPQAAAAAAAKAAAKFGAGAAG---VLPGVGGAGVPGVPGAIPGIGGIAGVGTPA 302
Query: 72 LA 73
A
Sbjct: 303 AA 304
>gi|18426973 DR1-associated protein 1 [Homo sapiens]
Length = 205
Score = 29.6 bits (65), Expect = 3.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 41 PVLPVAAAAELPPVPGGPRGPGE 63
P LP A+ LPP P GP P E
Sbjct: 175 PFLPFASTLPLPPAPPGPSAPDE 197
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 29.6 bits (65), Expect = 3.3
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 10/51 (19%)
Query: 34 PGLLGRLPVLPVAAAAELPPVPGGPRGPG---------ELAKYGLPGLAQL 75
PGL G+ P LP A +PGGP PG E + GLPGL L
Sbjct: 729 PGLPGK-PGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGL 778
Score = 28.1 bits (61), Expect = 9.7
Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 10/53 (18%)
Query: 30 ARAAPGLLGRLPVLPVAAAAELPPVPGGPRG----------PGELAKYGLPGL 72
A PG G L V+ PP P GP G PG L K G PGL
Sbjct: 635 APGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGL 687
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 29.6 bits (65), Expect = 3.3
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 10/51 (19%)
Query: 34 PGLLGRLPVLPVAAAAELPPVPGGPRGPG---------ELAKYGLPGLAQL 75
PGL G+ P LP A +PGGP PG E + GLPGL L
Sbjct: 729 PGLPGK-PGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGL 778
Score = 28.1 bits (61), Expect = 9.7
Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 10/53 (18%)
Query: 30 ARAAPGLLGRLPVLPVAAAAELPPVPGGPRG----------PGELAKYGLPGL 72
A PG G L V+ PP P GP G PG L K G PGL
Sbjct: 635 APGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGL 687
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 29.6 bits (65), Expect = 3.3
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 10/51 (19%)
Query: 34 PGLLGRLPVLPVAAAAELPPVPGGPRGPG---------ELAKYGLPGLAQL 75
PGL G+ P LP A +PGGP PG E + GLPGL L
Sbjct: 729 PGLPGK-PGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGL 778
Score = 28.1 bits (61), Expect = 9.7
Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 10/53 (18%)
Query: 30 ARAAPGLLGRLPVLPVAAAAELPPVPGGPRG----------PGELAKYGLPGL 72
A PG G L V+ PP P GP G PG L K G PGL
Sbjct: 635 APGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGL 687
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 29.6 bits (65), Expect = 3.3
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 10/51 (19%)
Query: 34 PGLLGRLPVLPVAAAAELPPVPGGPRGPG---------ELAKYGLPGLAQL 75
PGL G+ P LP A +PGGP PG E + GLPGL L
Sbjct: 729 PGLPGK-PGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGL 778
Score = 28.1 bits (61), Expect = 9.7
Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 10/53 (18%)
Query: 30 ARAAPGLLGRLPVLPVAAAAELPPVPGGPRG----------PGELAKYGLPGL 72
A PG G L V+ PP P GP G PG L K G PGL
Sbjct: 635 APGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGL 687
>gi|148225659 endonuclease domain containing 1 [Homo sapiens]
Length = 500
Score = 29.6 bits (65), Expect = 3.3
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 126 RATNADYRGSGFDRGHLAAAANHRWSQKAMDDTFYLSNVAPQVPHLNQNAWNNLEK-YSR 184
+A N DY S + RG L + S TF L+N AP + + NL R
Sbjct: 128 QALNTDYLDSDYQRGQLYPFS---LSSDVQVATFTLTNSAPMTQSFQERWYVNLHSLMDR 184
Query: 185 SLT---RSYQNVYVCTG 198
+LT S +++Y+ TG
Sbjct: 185 ALTPQCGSGEDLYILTG 201
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 29.3 bits (64), Expect = 4.4
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 31 RAAPGLLGRL--PVLPVAAAAELPPVPGGPRG-PGELAKYGLPGLAQLKSRESYVL-CYD 86
+ PGL G P P LP +PG PRG PG+ K GLPG L + L C
Sbjct: 601 KGLPGLPGEKGHPGPPGLPGNGLPGLPG-PRGLPGDKGKDGLPGQQGLPGSKGITLPCII 659
Query: 87 PRTRG 91
P + G
Sbjct: 660 PGSYG 664
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 29.3 bits (64), Expect = 4.4
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 31 RAAPGLLGRL--PVLPVAAAAELPPVPGGPRG-PGELAKYGLPGLAQLKSRESYVL-CYD 86
+ PGL G P P LP +PG PRG PG+ K GLPG L + L C
Sbjct: 600 KGLPGLPGEKGHPGPPGLPGNGLPGLPG-PRGLPGDKGKDGLPGQQGLPGSKGITLPCII 658
Query: 87 PRTRG 91
P + G
Sbjct: 659 PGSYG 663
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,547,955
Number of Sequences: 37866
Number of extensions: 641334
Number of successful extensions: 3173
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 2878
Number of HSP's gapped (non-prelim): 367
length of query: 297
length of database: 18,247,518
effective HSP length: 102
effective length of query: 195
effective length of database: 14,385,186
effective search space: 2805111270
effective search space used: 2805111270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.