Guide to the Human Genome
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Name: LOC100289126 Sequence: fasta or formatted (252aa) NCBI GI: 239745177
Description:

PREDICTED: hypothetical protein XP_002343381

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.9         35           3
 C cysteine            0.8          2           1
 D aspartate           1.6          4           1
 E glutamate           5.6         14           1
 F phenylalanine       2.0          5           2
 G glycine            12.7         32           3
 H histidine           2.0          5           1
 I isoleucine          1.2          3           1
 K lysine              3.6          9           2
 L leucine            10.7         27           2
 M methionine          0.8          2           1
 N asparagine          2.4          6           1
 P proline            12.7         32           3
 Q glutamine           6.7         17           2
 R arginine           10.7         27           2
 S serine              4.4         11           2
 T threonine           2.0          5           1
 V valine              3.6          9           1
 W tryptophan          2.0          5           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343381 
LOC100292048          0.994   PREDICTED: hypothetical protein XP_002344877 
LOC729417             0.034   PREDICTED: hypothetical protein 
LOC729417             0.034   PREDICTED: hypothetical protein 
LOC100291096          0.034   PREDICTED: hypothetical protein XP_002346952 
LOC729417             0.034   PREDICTED: hypothetical protein 
CDC42EP5              0.034   CDC42 effector protein 5 
FLJ22184              0.034   PREDICTED: hypothetical protein LOC80164 
FAM48B1               0.034   hypothetical protein LOC100130302 
LOC100291878          0.032   PREDICTED: similar to RIKEN cDNA C230030N03 
C2orf72               0.030   hypothetical protein LOC257407 
DONSON                0.030   downstream neighbor of SON 
HCN2                  0.030   hyperpolarization activated cyclic nucleotide-gated...
COL1A1                0.030   alpha 1 type I collagen preproprotein 
LOC100291634          0.030   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.030   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.030   PREDICTED: hypothetical protein 
LOC100292058          0.028   PREDICTED: hypothetical protein XP_002344766 
LOC100293055          0.028   PREDICTED: similar to COL22A1 protein 
LOC100290367          0.028   PREDICTED: hypothetical protein XP_002347417 
LOC100288730          0.028   PREDICTED: hypothetical protein XP_002343287 
LOC100293375          0.028   PREDICTED: hypothetical protein 
LOC728163             0.028   PREDICTED: hypothetical protein 
VASP                  0.026   vasodilator-stimulated phosphoprotein 
LOC649238             0.026   PREDICTED: similar to hCG1645335 
LOC100128074          0.026   PREDICTED: hypothetical protein 
LOC643355             0.026   PREDICTED: hypothetical protein 
LOC649238             0.026   PREDICTED: similar to hCG1645335 
LOC643355             0.026   PREDICTED: hypothetical protein 
DMRTA2                0.026   DMRT-like family A2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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