Guide to the Human Genome
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Name: LOC100292048 Sequence: fasta or formatted (252aa) NCBI GI: 239756268
Description:

PREDICTED: hypothetical protein XP_002344877

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.9         35           3
 C cysteine            0.8          2           1
 D aspartate           1.6          4           1
 E glutamate           5.6         14           1
 F phenylalanine       2.0          5           2
 G glycine            12.3         31           3
 H histidine           2.0          5           1
 I isoleucine          1.2          3           1
 K lysine              3.6          9           2
 L leucine            10.7         27           2
 M methionine          0.8          2           1
 N asparagine          2.4          6           1
 P proline            12.7         32           3
 Q glutamine           6.7         17           2
 R arginine           11.1         28           2
 S serine              4.4         11           2
 T threonine           2.0          5           1
 V valine              3.6          9           1
 W tryptophan          2.0          5           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344877 
LOC100289126          0.994   PREDICTED: hypothetical protein XP_002343381 
LOC100291096          0.036   PREDICTED: hypothetical protein XP_002346952 
LOC100291878          0.034   PREDICTED: similar to RIKEN cDNA C230030N03 
FLJ22184              0.034   PREDICTED: hypothetical protein LOC80164 
FAM48B1               0.032   hypothetical protein LOC100130302 
LOC100291634          0.032   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.032   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.032   PREDICTED: hypothetical protein 
HCN2                  0.030   hyperpolarization activated cyclic nucleotide-gated...
C2orf72               0.030   hypothetical protein LOC257407 
LOC729417             0.028   PREDICTED: hypothetical protein 
LOC729417             0.028   PREDICTED: hypothetical protein 
LOC729417             0.028   PREDICTED: hypothetical protein 
CDC42EP5              0.028   CDC42 effector protein 5 
MMP17                 0.028   matrix metalloproteinase 17 preproprotein 
LOC389333             0.028   hypothetical protein LOC389333 
LOC100128392          0.028   PREDICTED: hypothetical protein 
LOC100293375          0.028   PREDICTED: hypothetical protein 
LOC100128392          0.028   PREDICTED: hypothetical protein 
LOC100128392          0.028   PREDICTED: hypothetical protein 
VASP                  0.026   vasodilator-stimulated phosphoprotein 
LOC100127891          0.026   PREDICTED: hypothetical protein 
LOC100131455          0.026   PREDICTED: hypothetical protein 
LOC100131455          0.026   PREDICTED: hypothetical protein 
LOC100131455          0.026   PREDICTED: hypothetical protein 
LOC100293818          0.026   PREDICTED: hypothetical protein 
LOC649238             0.026   PREDICTED: similar to hCG1645335 
LOC100128074          0.026   PREDICTED: hypothetical protein 
LOC649238             0.026   PREDICTED: similar to hCG1645335 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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