Guide to the Human Genome
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Name: EEFSEC Sequence: fasta or formatted (596aa) NCBI GI: 54607086
Description:

eukaryotic elongation factor, selenocysteine-tRNA-specific

Referenced in:

Selenium Proteins
Translation Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         44           2
 C cysteine            1.8         11           1
 D aspartate           4.7         28           2
 E glutamate           6.0         36           2
 F phenylalanine       4.4         26           2
 G glycine             7.6         45           2
 H histidine           3.0         18           1
 I isoleucine          6.4         38           2
 K lysine              6.7         40           2
 L leucine            10.2         61           2
 M methionine          2.7         16           2
 N asparagine          1.7         10           1
 P proline             6.5         39           1
 Q glutamine           5.0         30           2
 R arginine            5.0         30           2
 S serine              6.9         41           2
 T threonine           6.0         36           2
 V valine              6.5         39           3
 W tryptophan          0.2          1           1
 Y tyrosine            1.2          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   eukaryotic elongation factor, selenocysteine-tRNA-sp... 
TUFM                  0.078   Tu translation elongation factor, mitochondrial prec...
EEF1A2                0.061   eukaryotic translation elongation factor 1 alpha 2 [H...
EIF2S3                0.058   eukaryotic translation initiation factor 2, subunit 3...
LOC100293909          0.055   PREDICTED: similar to eukaryotic translation elonga...
EEF1A1                0.050   eukaryotic translation elongation factor 1 alpha 1 [H...
HBS1L                 0.047   Hsp70 subfamily B suppressor 1-like protein isoform...
HBS1L                 0.047   Hsp70 subfamily B suppressor 1-like protein isoform 1...
MTIF2                 0.041   mitochondrial translational initiation factor 2 prec...
MTIF2                 0.041   mitochondrial translational initiation factor 2 prec...
EIF5B                 0.030   eukaryotic translation initiation factor 5B 
GTPBP1                0.029   GTP binding protein 1 
GSPT1                 0.028   G1 to S phase transition 1 isoform 3 
GSPT1                 0.028   G1 to S phase transition 1 isoform 2 
GSPT1                 0.028   G1 to S phase transition 1 isoform 1 
GSPT2                 0.022   peptide chain release factor 3 
GTPBP2                0.022   GTP binding protein 2 
GUF1                  0.021   GUF1 GTPase homolog 
EEF2                  0.017   eukaryotic translation elongation factor 2 
EFTUD1                0.017   elongation factor Tu GTP binding domain containing 1...
LOC727963             0.010   PREDICTED: similar to elongation factor Tu GTP bind...
LOC727963             0.010   PREDICTED: similar to elongation factor Tu GTP bind...
LOC727963             0.010   PREDICTED: similar to elongation factor Tu GTP bind...
GFM2                  0.010   mitochondrial elongation factor G2 isoform 2 
GFM2                  0.010   mitochondrial elongation factor G2 isoform 3 
GFM2                  0.010   mitochondrial elongation factor G2 isoform 1 
EFTUD1                0.010   elongation factor Tu GTP binding domain containing 1...
RFC1                  0.009   replication factor C large subunit 
GFM1                  0.008   G elongation factor, mitochondrial 1 
EFTUD2                0.007   elongation factor Tu GTP binding domain containing ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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