Guide to the Human Genome
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Name: ENDOD1 Sequence: fasta or formatted (500aa) NCBI GI: 148225659
Description:

endonuclease domain containing 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         40           2
 C cysteine            2.6         13           2
 D aspartate           4.6         23           2
 E glutamate           5.8         29           3
 F phenylalanine       5.0         25           2
 G glycine             7.4         37           3
 H histidine           0.6          3           1
 I isoleucine          5.6         28           2
 K lysine              4.8         24           2
 L leucine            11.2         56           2
 M methionine          2.0         10           1
 N asparagine          2.8         14           2
 P proline             4.8         24           2
 Q glutamine           4.2         21           1
 R arginine            4.6         23           1
 S serine              7.6         38           3
 T threonine           5.4         27           1
 V valine              8.4         42           2
 W tryptophan          1.4          7           1
 Y tyrosine            3.2         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   endonuclease domain containing 1 
UIMC1                 0.012   ubiquitin interaction motif containing 1 
EXOG                  0.009   endo/exonuclease (5'-3'), endonuclease G-like isofo...
EXOG                  0.009   endo/exonuclease (5'-3'), endonuclease G-like isofo...
RILPL1                0.008   Rab interacting lysosomal protein-like 1 
GAS2L3                0.008   growth arrest-specific 2 like 3 
SCEL                  0.007   sciellin isoform 3 
SCEL                  0.007   sciellin isoform 1 
SCEL                  0.007   sciellin isoform 2 
CCDC88A               0.007   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.007   coiled-coil domain containing 88A isoform 1 
MYH11                 0.006   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.006   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.006   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.006   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
CDC14B                0.006   CDC14 homolog B isoform 3 
CDC14B                0.006   CDC14 homolog B isoform 1 
CDC14B                0.006   CDC14 homolog B isoform 2 
VRK3                  0.006   vaccinia related kinase 3 isoform 2 
VRK3                  0.006   vaccinia related kinase 3 isoform 1 
INTS3                 0.005   integrator complex subunit 3 
C7orf27               0.005   hypothetical protein LOC221927 
ENDOG                 0.005   endonuclease G precursor 
NLRP13                0.005   NACHT, leucine rich repeat and PYD containing 13 [H...
HIVEP2                0.004   human immunodeficiency virus type I enhancer bindin...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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