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Search of human proteins with 13375756
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13375756 occludin/ELL domain containing 1 [Homo sapiens]
(264 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13375756 occludin/ELL domain containing 1 [Homo sapiens] 555 e-158
gi|84370252 MARVEL domain containing 2 isoform 1 [Homo sapiens] 119 2e-27
gi|5729812 elongation factor RNA polymerase II [Homo sapiens] 60 2e-09
gi|155722987 elongation factor, RNA polymerase II, 2 [Homo sapiens] 59 4e-09
gi|13376768 elongation factor RNA polymerase II-like 3 [Homo sap... 55 5e-08
gi|4505487 occludin [Homo sapiens] 48 8e-06
gi|33356148 formin-like 1 [Homo sapiens] 47 2e-05
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 46 3e-05
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 46 4e-05
gi|237757312 synaptojanin 1 isoform c [Homo sapiens] 44 1e-04
gi|33286436 gametogenetin [Homo sapiens] 44 1e-04
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 43 3e-04
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens] 42 4e-04
gi|18959210 WIRE protein [Homo sapiens] 42 7e-04
gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo sa... 41 0.001
gi|209413756 synapsin III isoform IIIg [Homo sapiens] 41 0.001
gi|209413752 synapsin III isoform IIIa [Homo sapiens] 41 0.001
gi|54860079 nadrin isoform 1 [Homo sapiens] 41 0.001
gi|54860105 nadrin isoform 2 [Homo sapiens] 41 0.001
gi|156071472 CD2 molecule [Homo sapiens] 41 0.001
gi|118918413 MICAL C-terminal like [Homo sapiens] 40 0.002
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 40 0.002
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 40 0.003
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 40 0.003
gi|239754940 PREDICTED: hypothetical protein [Homo sapiens] 40 0.003
gi|110832843 TBP-associated factor 4 [Homo sapiens] 40 0.003
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 40 0.003
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 40 0.003
gi|18079216 CASK interacting protein 1 [Homo sapiens] 39 0.004
>gi|13375756 occludin/ELL domain containing 1 [Homo sapiens]
Length = 264
Score = 555 bits (1429), Expect = e-158
Identities = 264/264 (100%), Positives = 264/264 (100%)
Query: 1 MHNPDGSASPTADPGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTR 60
MHNPDGSASPTADPGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTR
Sbjct: 1 MHNPDGSASPTADPGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTR 60
Query: 61 EPPKTRGSRGHLHTHPPGPGPPLQGLAPRGLKTSAPRPPCQPQPGPHKAKTKKIVFEDEL 120
EPPKTRGSRGHLHTHPPGPGPPLQGLAPRGLKTSAPRPPCQPQPGPHKAKTKKIVFEDEL
Sbjct: 61 EPPKTRGSRGHLHTHPPGPGPPLQGLAPRGLKTSAPRPPCQPQPGPHKAKTKKIVFEDEL 120
Query: 121 LSQALLGAKKPIGAIPKGHKPRPHPVPDYELKYPPVSSERERSRYVAVFQDQYGEFLELQ 180
LSQALLGAKKPIGAIPKGHKPRPHPVPDYELKYPPVSSERERSRYVAVFQDQYGEFLELQ
Sbjct: 121 LSQALLGAKKPIGAIPKGHKPRPHPVPDYELKYPPVSSERERSRYVAVFQDQYGEFLELQ 180
Query: 181 HEVGCAQAKLRQLEALLSSLPPPQSQKEAQVAARVWREFEMKRMDPGFLDKQARCHYLKG 240
HEVGCAQAKLRQLEALLSSLPPPQSQKEAQVAARVWREFEMKRMDPGFLDKQARCHYLKG
Sbjct: 181 HEVGCAQAKLRQLEALLSSLPPPQSQKEAQVAARVWREFEMKRMDPGFLDKQARCHYLKG 240
Query: 241 KLRHLKTQIQKFDDQGDSEGSVYF 264
KLRHLKTQIQKFDDQGDSEGSVYF
Sbjct: 241 KLRHLKTQIQKFDDQGDSEGSVYF 264
>gi|84370252 MARVEL domain containing 2 isoform 1 [Homo sapiens]
Length = 558
Score = 119 bits (299), Expect = 2e-27
Identities = 63/161 (39%), Positives = 98/161 (60%), Gaps = 3/161 (1%)
Query: 94 SAPRPPCQPQPGPHKAKTKKIVFEDELLSQALLGAKKPIGAIPKGHKPRPHPVPDYELKY 153
S+ R C+ + + ++ F++ L A + + G IP GH P+P +PDY KY
Sbjct: 389 SSKRKMCEMATSGDRQRDSEVNFKE--LRTAKMKPELLSGHIPPGHIPKPIVMPDYVAKY 446
Query: 154 PPVSSERERSRYVAVFQDQYGEFLELQHEVGCAQAKLRQLEALLSSLP-PPQSQKEAQVA 212
P + ++ ER RY AVFQDQ+ E+ EL EV K +L+A++S LP +S++E +
Sbjct: 447 PVIQTDDERERYKAVFQDQFSEYKELSAEVQAVLRKFDELDAVMSRLPHHSESRQEHERI 506
Query: 213 ARVWREFEMKRMDPGFLDKQARCHYLKGKLRHLKTQIQKFD 253
+R+ EF+ K+ DP FL+K+ RC YLK KL H+K +IQ++D
Sbjct: 507 SRIHEEFKKKKNDPTFLEKKERCDYLKNKLSHIKQRIQEYD 547
>gi|5729812 elongation factor RNA polymerase II [Homo sapiens]
Length = 621
Score = 60.1 bits (144), Expect = 2e-09
Identities = 63/270 (23%), Positives = 95/270 (35%), Gaps = 45/270 (16%)
Query: 10 PTADPGSELQTLGQAARRPP---PPRAGHDAPRRTRPSARKPLSCFSRRPMPTREPPKTR 66
PT P + TL + PP PPRA HD P+
Sbjct: 367 PTPGPPASTDTLSSSTHLPPRLEPPRA-HD-------------------PLADVSNDLGH 406
Query: 67 GSRGHLHTHPPGPGPPLQGLAPRGLKTSAPRPP------CQPQPGPHKAKTKKIVFEDEL 120
R H P P ++ P + P P +P+ K K K+ ED+
Sbjct: 407 SGRDCEHGEAAAPAPTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAAEDKP 466
Query: 121 LSQALLGAKKPIGAIPKGHKPRP---------------HPVPDYELKYPPVSSERERSRY 165
+Q L A P P PDY LKY +SS +R Y
Sbjct: 467 RAQ-LPDCAPATHATPGAPADTPGLNGTCSVSSVPTSTSETPDYLLKYAAISSSEQRQSY 525
Query: 166 VAVFQDQYGEFLELQHEVGCAQAKLRQLEALLSSLPPPQSQKEAQVAARVWREFEMKRMD 225
F +Y E+ +L + + QL+A L L + E + ++K+ +
Sbjct: 526 KNDFNAEYSEYRDLHARIERITRRFTQLDAQLRQLSQGSEEYETTRGQILQEYRKIKKTN 585
Query: 226 PGFLDKQARCHYLKGKLRHLKTQIQKFDDQ 255
+ ++ RC YL KL H+K I ++D +
Sbjct: 586 TNYSQEKHRCEYLHSKLAHIKRLIAEYDQR 615
>gi|155722987 elongation factor, RNA polymerase II, 2 [Homo sapiens]
Length = 640
Score = 58.9 bits (141), Expect = 4e-09
Identities = 58/248 (23%), Positives = 102/248 (41%), Gaps = 22/248 (8%)
Query: 29 PPPRAGHDAPRRTRPSARK----PLSCFSRRPMPTREPPKTRGSRGHLHTHPPG------ 78
PP ++ + P R P+ FS+ + SR L T PPG
Sbjct: 388 PPQIVNSNSNSPSTPEGRGTQDLPVDSFSQNDSIYEDQQDKYTSRTSLETLPPGSVLLKC 447
Query: 79 --PGPPLQGLAPRGLKTSAPRPPCQPQPGPHKAKTKKIVFED----ELLSQALLGAKKPI 132
P ++ + K + + + Q H +T + ED E +++ +
Sbjct: 448 PKPMEENHSMSHKKSKKKSKKHKEKDQIKKHDIETIEEKEEDLKREEEIAKLNNSSPNSS 507
Query: 133 GAIPK----GHKPRPHPVPDYELKYPPVSSERERSRYVAVFQDQYGEFLELQHEVGCAQA 188
G + + +P +PDY +KY + S +R Y F +Y E+ L +
Sbjct: 508 GGVKEDCTASMEPSAIELPDYLIKYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVAR 567
Query: 189 KLRQLEALLSSLPPPQSQKEAQVAARVWREFE-MKRMDPGFLDKQARCHYLKGKLRHLKT 247
+ +L+A L P S++ V V +E++ +K+ P + +++ RC YL KL H+K
Sbjct: 568 RFIKLDAQRKRLSPG-SKEYQNVHEEVLQEYQKIKQSSPNYHEEKYRCEYLHNKLAHIKR 626
Query: 248 QIQKFDDQ 255
I +FD Q
Sbjct: 627 LIGEFDQQ 634
>gi|13376768 elongation factor RNA polymerase II-like 3 [Homo
sapiens]
Length = 397
Score = 55.5 bits (132), Expect = 5e-08
Identities = 29/115 (25%), Positives = 55/115 (47%)
Query: 141 PRPHPVPDYELKYPPVSSERERSRYVAVFQDQYGEFLELQHEVGCAQAKLRQLEALLSSL 200
P P +PDY L+Y + S ++ Y F+ Y E+ L VG A + +L A + +
Sbjct: 279 PSPEDIPDYLLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRV 338
Query: 201 PPPQSQKEAQVAARVWREFEMKRMDPGFLDKQARCHYLKGKLRHLKTQIQKFDDQ 255
+ + + + ++ P + +++ RC YL KL H+K I +F+++
Sbjct: 339 RRGTPEYKVLEDKIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEK 393
>gi|4505487 occludin [Homo sapiens]
Length = 522
Score = 48.1 bits (113), Expect = 8e-06
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 148 DYELKYPPVSSERERSRYVAVFQDQYGEFLELQHEVGCAQAKLRQLEALLSSLPPPQSQK 207
D+ +YPP++S+++R Y F E+ LQ E+ +L +L+ L + +
Sbjct: 415 DWIREYPPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSRLDKELDDY--REESE 472
Query: 208 EAQVAARVWREFEMKRMDPGFLDKQARCHYLKGKLRHLKTQIQKFDDQ 255
E AA + + + + K+ C LK KL H+K + +D Q
Sbjct: 473 EYMAAADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDYDRQ 520
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 47.0 bits (110), Expect = 2e-05
Identities = 37/104 (35%), Positives = 42/104 (40%), Gaps = 14/104 (13%)
Query: 4 PDGSASPTADPGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMP-TREP 62
P GS SP P +E AA PPPP G +P+ PSA P+P + EP
Sbjct: 522 PTGSPSPDLAPAAE--PAPGAAPPPPPPLPGLPSPQEAPPSAPP-----QAPPLPGSPEP 574
Query: 63 PKTRGSRGHLHTHPPGPGPPLQGLAPRGLKTSAPRPPCQPQPGP 106
P G L PP P P P G P PP P P P
Sbjct: 575 PPAPPLPGDLPPPPPPPPP------PPGTDGPVPPPPPPPPPPP 612
Score = 28.9 bits (63), Expect = 4.8
Identities = 40/157 (25%), Positives = 47/157 (29%), Gaps = 35/157 (22%)
Query: 16 SELQTLGQAARRPPPPRAGHDAPRRTRPSA-----------------RKPLSCFSRRPMP 58
SE +G + R P P +A AP TRPSA R P S +P
Sbjct: 448 SESTAMGASRRPPEPEKAPPAAP--TRPSALELKVEELEEKGLIRILRGPGDAVSIEILP 505
Query: 59 TREPPKTRGSRGHLHTHPPGPGPPLQGLAPRGLKTSAPRPPCQPQPGPHKAKTKKIVFED 118
+ G P PG P +P + P P P P P
Sbjct: 506 VAVATPSGGDA-------PTPGVPTGSPSPDLAPAAEPAPGAAPPPPPPL---------P 549
Query: 119 ELLSQALLGAKKPIGAIPKGHKPRPHPVPDYELKYPP 155
L S P A P P P P P PP
Sbjct: 550 GLPSPQEAPPSAPPQAPPLPGSPEPPPAPPLPGDLPP 586
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 46.2 bits (108), Expect = 3e-05
Identities = 47/160 (29%), Positives = 65/160 (40%), Gaps = 34/160 (21%)
Query: 5 DGSASPTADPGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTREPPK 64
D S SP + PG + PPP+ G+ P+ P KP + PP
Sbjct: 85 DKSRSPRSPPGKP---------QGPPPQGGNQ-PQGPPPPPGKP-----------QGPPP 123
Query: 65 TRGSRGHLHTHPPGPGPPLQGLAPRGLKTSAPR-PPCQPQPGPHKAKTKKIVFEDELLSQ 123
G+R PP PG P QG P+G K+ +PR PP +PQ P + +
Sbjct: 124 QGGNRPQ---GPPPPGKP-QGPPPQGDKSRSPRSPPGKPQGPPPQGGNQP--------QG 171
Query: 124 ALLGAKKPIGAIPKGHKPRPHPVPDYELKYPPVSSERERS 163
KP G P+G K P P + + PP ++ RS
Sbjct: 172 PPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRS 211
Score = 41.2 bits (95), Expect = 0.001
Identities = 35/113 (30%), Positives = 45/113 (39%), Gaps = 11/113 (9%)
Query: 2 HNPDGSASPTADPGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTRE 61
+ P G P P G+ + PPPP P+ P K S S P
Sbjct: 167 NQPQGPPPPPGKPQGPPPQGGKKPQGPPPP----GKPQGPPPQGDKSRSSQSPPGKPQGP 222
Query: 62 PPKTRGSRGHLHTHPPGP--GPPLQGLAPRGLKTSAPRPPCQPQPGPHKAKTK 112
PP+ G++ PPG GPP QG G K P PP +PQ P + +K
Sbjct: 223 PPQG-GNQPQGPPPPPGKPQGPPPQG----GNKPQGPPPPGKPQGPPAQGGSK 270
Score = 37.4 bits (85), Expect = 0.014
Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 10/109 (9%)
Query: 56 PMPTREPPKTRGSRGHLHTHPPGPGPPLQGLAPRGLKTSAPR-PPCQPQPGPHKAKTKKI 114
P P +P G+ PP PG P QG P+G K+ +PR PP +PQ P + +
Sbjct: 51 PPPPGKPQGPPPQGGNKPQGPPPPGKP-QGPPPQGDKSRSPRSPPGKPQGPPPQGGNQP- 108
Query: 115 VFEDELLSQALLGAKKPIGAIPKGHKPRPHPVPDYELKYPPVSSERERS 163
KP G P+G P P + + PP ++ RS
Sbjct: 109 -------QGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRS 150
Score = 36.2 bits (82), Expect = 0.030
Identities = 31/112 (27%), Positives = 39/112 (34%), Gaps = 22/112 (19%)
Query: 2 HNPDGSASPTADPGSELQTLGQAARRPPPPRAGHDAPRR---TRPSARKPLSCFSRRPMP 58
+ P G P P G + PPPP P + SAR P P
Sbjct: 228 NQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSP-------PGK 280
Query: 59 TREPPKTRGSRGHLHTHPPGPGPPLQG------LAPRGLKTSAPRPPCQPQP 104
+ PP+ G+ +P GP PP G P G PRPP +P
Sbjct: 281 PQGPPQQEGN------NPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRP 326
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 45.8 bits (107), Expect = 4e-05
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 19/157 (12%)
Query: 2 HNPDGSASPTADPGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTRE 61
+ P G P P G + PPPP P + +R S P +
Sbjct: 127 NQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRS----PPGKPQG 182
Query: 62 PPKTRGSRGHLHTHPPGP--GPPLQGLAPRGLKTSAPRPPCQPQPGPHKAKTKKIVFEDE 119
PP G++ PPG GPP QG G K P PP +PQ P + K
Sbjct: 183 PPPQGGNQPQGPPPPPGKPQGPPPQG----GNKPQGPPPPGKPQGPPPQGDNKS------ 232
Query: 120 LLSQALLGAKKPIGAIPK-GHKPRPHPVPDYELKYPP 155
A KP G P+ G++P+ P P + + PP
Sbjct: 233 --QSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP 267
Score = 44.7 bits (104), Expect = 8e-05
Identities = 45/160 (28%), Positives = 61/160 (38%), Gaps = 25/160 (15%)
Query: 2 HNPDGSASPTADPGSELQTLGQAARRPPPPRAGHDAPRR---TRPSARKPLSCFSRRPMP 58
+ P G P P G + PPPP P + SAR P P
Sbjct: 189 NQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSP-------PGK 241
Query: 59 TREPPKTRGSRGHLHTHPPGP--GPPLQGLAPRGLKTSAPRPPCQPQPGPHKAKTKKIVF 116
+ PP G++ PPG GPP QG G K P PP +PQ P + +K
Sbjct: 242 PQGPPPQGGNQPQGPPPPPGKPQGPPPQG----GNKPQGPPPPGKPQGPPPQGGSKS--- 294
Query: 117 EDELLSQALLGAKKPIGAIPK-GHKPRPHPVPDYELKYPP 155
+ KP G P+ G++P+ P P + + PP
Sbjct: 295 -----RSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP 329
Score = 44.3 bits (103), Expect = 1e-04
Identities = 45/157 (28%), Positives = 60/157 (38%), Gaps = 20/157 (12%)
Query: 2 HNPDGSASPTADPGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTRE 61
+ P G P P G + PPPP P + S R P S P +
Sbjct: 66 NQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKS-RSPRS----PPGKPQG 120
Query: 62 PPKTRGSRGHLHTHPPGP--GPPLQGLAPRGLKTSAPRPPCQPQPGPHKAKTKKIVFEDE 119
PP G++ PPG GPP QG G K P PP +PQ P + K
Sbjct: 121 PPPQGGNQPQGPPPPPGKPQGPPPQG----GNKPQGPPPPGKPQGPPPQGDNKS------ 170
Query: 120 LLSQALLGAKKPIGAIPK-GHKPRPHPVPDYELKYPP 155
+ KP G P+ G++P+ P P + + PP
Sbjct: 171 --RSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP 205
Score = 41.2 bits (95), Expect = 0.001
Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 10/113 (8%)
Query: 2 HNPDGSASPTADPGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTRE 61
+ P G P P G + PPPP P + +R S P +
Sbjct: 251 NQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRS----PPGKPQG 306
Query: 62 PPKTRGSRGHLHTHPPGP--GPPLQGLAPRGLKTSAPRPPCQPQPGPHKAKTK 112
PP G++ PPG GPP QG G K P PP +PQ P + +K
Sbjct: 307 PPPQGGNQPQGPPPPPGKPQGPPPQG----GNKPQGPPPPGKPQGPPPQGGSK 355
Score = 35.8 bits (81), Expect = 0.039
Identities = 29/109 (26%), Positives = 38/109 (34%), Gaps = 16/109 (14%)
Query: 2 HNPDGSASPTADPGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTRE 61
+ P G P P G + PPPP P + +R S P +
Sbjct: 313 NQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARS----PPGKPQG 368
Query: 62 PPKTRGSRGHLHTHPPGPGPPLQG------LAPRGLKTSAPRPPCQPQP 104
PP+ G+ +P GP PP G P G PRPP +P
Sbjct: 369 PPQQEGN------NPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRP 411
Score = 34.7 bits (78), Expect = 0.088
Identities = 34/116 (29%), Positives = 47/116 (40%), Gaps = 24/116 (20%)
Query: 2 HNPDGSASPTADPGSELQ--TLGQAARRPP-----PPRAGHDAPRRTRPSARKPLSCFSR 54
+ P G P G Q + +++R PP PP G + P+ P KP
Sbjct: 272 NKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKP------ 325
Query: 55 RPMPTREPPKTRGSRGHLHTHPPGPGPPLQGLAPRG--LKTSAPRPPCQPQPGPHK 108
+ PP G++ PP PG P QG P+G SA PP +PQ P +
Sbjct: 326 -----QGPPPQGGNKPQ---GPPPPGKP-QGPPPQGGSKSRSARSPPGKPQGPPQQ 372
>gi|237757312 synaptojanin 1 isoform c [Homo sapiens]
Length = 1295
Score = 44.3 bits (103), Expect = 1e-04
Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 10 PTADPGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTRE---PPKTR 66
P DP L+ +RPPPPR P R P R P +R P PTR+ PK+
Sbjct: 1095 PQKDPAQPLEP-----KRPPPPRPVAP-PTRPAPPQRPPPPSGARSPAPTRKEFGAPKSP 1148
Query: 67 GS--RGHLHTHPPGPGPPLQGLAPRGLKTSAPRPP 99
G+ + ++ P P L G P G T+ P P
Sbjct: 1149 GTTRKDNIGRSQPSPQAGLAGPGPAGYSTARPTIP 1183
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 43.9 bits (102), Expect = 1e-04
Identities = 42/136 (30%), Positives = 49/136 (36%), Gaps = 18/136 (13%)
Query: 28 PPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTREPPKTRGSRGHLHTHPPGPGPP-LQGL 86
PPPP H AP RRP P P T + P PGPP LQ L
Sbjct: 391 PPPPEQIHSAPG-------------PRRPAPALLAPPTFIFPAPTNGEPMRPGPPGLQEL 437
Query: 87 APRGLKTSAPR---PPCQPQPGP-HKAKTKKIVFEDELLSQALLGAKKPIGAIPKGHKPR 142
P T P P QP P P T + ++ L+ A P A + P
Sbjct: 438 PPLPPPTPPPTLQPPALQPTPLPVAPPLTPGLGHKESALAPTAAPALPPALAADQAPAPS 497
Query: 143 PHPVPDYELKYPPVSS 158
P P P PPVS+
Sbjct: 498 PAPAPTVAEPSPPVSA 513
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 42.7 bits (99), Expect = 3e-04
Identities = 47/168 (27%), Positives = 54/168 (32%), Gaps = 45/168 (26%)
Query: 4 PDGSASPTADPGSELQTLGQAARRPPPPR----AGHDAPRRTRPSARKPLSCFSR-RPMP 58
P GS P P L G PPPP AGH P P A P S P P
Sbjct: 239 PPGSFPPPVPPPGALPP-GIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFP 297
Query: 59 TREPPKTRGSR-----------GHLHTHPPGPGPPLQGLAPRGLKTSAPRPPCQPQPGPH 107
P S+ GH H PPG G P G+ P P P GP
Sbjct: 298 PGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGP- 356
Query: 108 KAKTKKIVFEDELLSQALLGAKKPIGAIPKGHKPRPHPVPDYELKYPP 155
P G+ P GH P P+P + ++ PP
Sbjct: 357 -----------------------PFGS-PMGH---PGPMPPHGMRGPP 377
Score = 37.7 bits (86), Expect = 0.010
Identities = 35/112 (31%), Positives = 38/112 (33%), Gaps = 15/112 (13%)
Query: 2 HNPDGSASPTADPGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTRE 61
H P G P A P + GQ RPPP P P P PM
Sbjct: 314 HGPHGLGHPHAGPPG---SGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGS----PMGHPG 366
Query: 62 PPKTRGSRG-------HLHTHPPGPGPPLQGLAPRGLKTSAPRPPCQPQPGP 106
P G RG H +T PP P P P PRPP P+ GP
Sbjct: 367 PMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPR-GP 417
>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 42.4 bits (98), Expect = 4e-04
Identities = 52/173 (30%), Positives = 64/173 (36%), Gaps = 20/173 (11%)
Query: 14 PGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTREPPKTRGSRGHLH 73
PG L G RP P A APR RP+A + LS + R P G G +
Sbjct: 36 PGPALVVAGLDGIRPAPAAAHPPAPRE-RPAAAR-LSALAAAQPRRRSPGPQGGGGGDI- 92
Query: 74 THPPGPGPPLQGLAPRGLKTSAPRPPCQPQPGPHKAKTKKIVFEDELLSQALLGAKKPI- 132
P PP L PRG AP P P PGP A+ L S G +P+
Sbjct: 93 ---ASPLPP--ALQPRG----APAVPAAPSPGPLPARPSSPPPRPSLPS----GPHRPVL 139
Query: 133 --GAIPKGHKPRPHPVPDYELKYPPVSSERERSRYVAVFQDQYGEFLELQHEV 183
A+ P P+P + +R RSR A + G L H V
Sbjct: 140 PPSALAAPRPPLARPLPQGSVT-AREQEQRPRSRRRAGAPEALGPALTRIHNV 191
>gi|18959210 WIRE protein [Homo sapiens]
Length = 440
Score = 41.6 bits (96), Expect = 7e-04
Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 17/115 (14%)
Query: 4 PDGSASPTADPGSEL-QTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTREP 62
P+G +SPT + EL Q R+ P P G P P++ P +R P P R+P
Sbjct: 262 PNGPSSPTNESAPELPQRHNSLHRKTPGPVRGLAPPP---PTSASPSLLSNRPPPPARDP 318
Query: 63 PKTRGSRGHLHTHPPGPGPPLQGLA------PRGLKTSAPRPPCQPQPGPHKAKT 111
P SRG PP P P ++ A P + PP + +P P ++T
Sbjct: 319 P----SRG---AAPPPPPPVIRNGARDAPPPPPPYRMHGSEPPSRGKPPPPPSRT 366
Score = 33.1 bits (74), Expect = 0.26
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Query: 5 DGSASPTADPGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSR--RP-MPTRE 61
DGS + P ++ + AA RPP A P+ S+R L R RP +P
Sbjct: 102 DGSENLAGKPALQIPSSRAAAPRPPVSAAS-GRPQDDTDSSRASLPELPRMQRPSLPDLS 160
Query: 62 PPKTRGSRGHLHTHPPGPGPPLQGLAPRGLKTSAPRPP 99
P T S G H+ P P P G + +AP P
Sbjct: 161 RPNTTSSTGMKHSSSAPPPP------PPGRRANAPPTP 192
Score = 32.0 bits (71), Expect = 0.57
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 28 PPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTREPP--KTRGSRGHLHTH-PPGPGPPLQ 84
PPPP G R P P+ S+ P RE P T G R H PP P P
Sbjct: 177 PPPPPPGR---RANAPPTPLPMHS-SKAPAYNREKPLPPTPGQRLHPGREGPPAPPPVKP 232
Query: 85 GLAPRGLKTSAPRPPCQPQPGPHK 108
+P ++T P P P++
Sbjct: 233 PPSPVNIRTGPSGQSLAPPPPPYR 256
Score = 28.5 bits (62), Expect = 6.3
Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 13/104 (12%)
Query: 10 PTADPGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTREPPKTRGSR 69
P + ++ A PPP R + P + K + +P+ P T G R
Sbjct: 162 PNTTSSTGMKHSSSAPPPPPPGRRANAPPTPLPMHSSKAPAYNREKPL-----PPTPGQR 216
Query: 70 GHLHTHPPGPGPPLQ--------GLAPRGLKTSAPRPPCQPQPG 105
H P PP++ P G + P PP + PG
Sbjct: 217 LHPGREGPPAPPPVKPPPSPVNIRTGPSGQSLAPPPPPYRQPPG 260
>gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo
sapiens]
Length = 756
Score = 41.2 bits (95), Expect = 0.001
Identities = 55/200 (27%), Positives = 74/200 (37%), Gaps = 34/200 (17%)
Query: 4 PDGSASPTADPGSELQTLGQAARRPPPPRAGHDAP---------RRTRPSARKPLSCFSR 54
PDG + PG LG P P G D P R L R
Sbjct: 24 PDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAPGAAADGGARWSAGPAPGLEGGPR 83
Query: 55 RPMPTREPPKTRGSRGHLHT-HPPGPGP----PLQGLAPRGLKTSAPR---PPCQPQPGP 106
P P+ PP++ G RG L + PGPGP PL L P T P P P+ P
Sbjct: 84 DPGPSAPPPRS-GPRGQLASPDAPGPGPRSEAPLPELDPLFSWTEEPEECGPASCPESAP 142
Query: 107 ---------HKAKTKKIVFED-ELLSQALLGAKKPIGAIPK-GHKPRPHPVPDYELKYPP 155
H+A+ + VF + L ++ G+ P+ + HP+P P
Sbjct: 143 FRLQGSSSSHRARGEVDVFSPFPAPTAGELALEQGPGSPPQPSDLSQTHPLPS-----EP 197
Query: 156 VSSERERSRYVAVFQDQYGE 175
V S+ + R AVF G+
Sbjct: 198 VGSQEDGPRLRAVFDALDGD 217
>gi|209413756 synapsin III isoform IIIg [Homo sapiens]
Length = 579
Score = 41.2 bits (95), Expect = 0.001
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 18/103 (17%)
Query: 25 ARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTREPPKTRGSRGHLHTHP-----PG- 78
A+ P P R+G + +R P ++PLS S P R P + SR + P PG
Sbjct: 444 AQSPQPQRSGSPSQQRLSPQGQQPLSPQSGSPQQQRSPGSPQLSRASSGSSPNQASKPGA 503
Query: 79 -----PGPPLQG--LAPRGLKTSAPRPPCQPQPGPHKAKTKKI 114
P PP+QG + +G ++ P P P PH K++ +
Sbjct: 504 TLASQPRPPVQGRSTSQQGEESKKPAP-----PHPHLNKSQSL 541
>gi|209413752 synapsin III isoform IIIa [Homo sapiens]
Length = 580
Score = 41.2 bits (95), Expect = 0.001
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 18/103 (17%)
Query: 25 ARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTREPPKTRGSRGHLHTHP-----PG- 78
A+ P P R+G + +R P ++PLS S P R P + SR + P PG
Sbjct: 445 AQSPQPQRSGSPSQQRLSPQGQQPLSPQSGSPQQQRSPGSPQLSRASSGSSPNQASKPGA 504
Query: 79 -----PGPPLQG--LAPRGLKTSAPRPPCQPQPGPHKAKTKKI 114
P PP+QG + +G ++ P P P PH K++ +
Sbjct: 505 TLASQPRPPVQGRSTSQQGEESKKPAP-----PHPHLNKSQSL 542
>gi|54860079 nadrin isoform 1 [Homo sapiens]
Length = 881
Score = 41.2 bits (95), Expect = 0.001
Identities = 41/139 (29%), Positives = 51/139 (36%), Gaps = 9/139 (6%)
Query: 10 PTADPGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTREPPKTRGSR 69
PT P Q GQ +P P + APRR S LS P +PP
Sbjct: 671 PTRSPSPPTQHTGQPPGQPSAP-SQLSAPRRYSSS----LSPIQAPNHPPPQPPTQATPL 725
Query: 70 GHLHTHPPGPGPPLQGLAPRGLKTSAPRPPCQPQPGPHKAKTKKIVFEDELLSQALLGAK 129
H + GP P+ + GL+ + PP P P K+ L + L
Sbjct: 726 MHTKPNSQGPPNPMALPSEHGLEQPSHTPPQTPTPPSTPPLGKQ---NPSLPAPQTLAGG 782
Query: 130 KPIGAIP-KGHKPRPHPVP 147
P A P G PRP PVP
Sbjct: 783 NPETAQPHAGTLPRPRPVP 801
Score = 35.8 bits (81), Expect = 0.039
Identities = 35/121 (28%), Positives = 47/121 (38%), Gaps = 22/121 (18%)
Query: 1 MHNPDGSASPTADPGSELQTLGQAARR--PPPPRAGHDAPRRTRPSARKPLSCFSRRPMP 58
M P +A P+ TL +A ++ P PP+ G+ P P + P
Sbjct: 615 MGQPHNAAGPSP------HTLRRAVKKPAPAPPKPGNPPP--GHPGGQSSSGTSQHPPSL 666
Query: 59 TREPPKTRGSRGHLHT-HPPG-PGPPLQGLAPRGLKTS----------APRPPCQPQPGP 106
+ +PP S HT PPG P P Q APR +S P+PP Q P
Sbjct: 667 SPKPPTRSPSPPTQHTGQPPGQPSAPSQLSAPRRYSSSLSPIQAPNHPPPQPPTQATPLM 726
Query: 107 H 107
H
Sbjct: 727 H 727
>gi|54860105 nadrin isoform 2 [Homo sapiens]
Length = 803
Score = 41.2 bits (95), Expect = 0.001
Identities = 41/139 (29%), Positives = 51/139 (36%), Gaps = 9/139 (6%)
Query: 10 PTADPGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTREPPKTRGSR 69
PT P Q GQ +P P + APRR S LS P +PP
Sbjct: 593 PTRSPSPPTQHTGQPPGQPSAP-SQLSAPRRYSSS----LSPIQAPNHPPPQPPTQATPL 647
Query: 70 GHLHTHPPGPGPPLQGLAPRGLKTSAPRPPCQPQPGPHKAKTKKIVFEDELLSQALLGAK 129
H + GP P+ + GL+ + PP P P K+ L + L
Sbjct: 648 MHTKPNSQGPPNPMALPSEHGLEQPSHTPPQTPTPPSTPPLGKQ---NPSLPAPQTLAGG 704
Query: 130 KPIGAIP-KGHKPRPHPVP 147
P A P G PRP PVP
Sbjct: 705 NPETAQPHAGTLPRPRPVP 723
Score = 35.8 bits (81), Expect = 0.039
Identities = 35/121 (28%), Positives = 47/121 (38%), Gaps = 22/121 (18%)
Query: 1 MHNPDGSASPTADPGSELQTLGQAARR--PPPPRAGHDAPRRTRPSARKPLSCFSRRPMP 58
M P +A P+ TL +A ++ P PP+ G+ P P + P
Sbjct: 537 MGQPHNAAGPSP------HTLRRAVKKPAPAPPKPGNPPP--GHPGGQSSSGTSQHPPSL 588
Query: 59 TREPPKTRGSRGHLHT-HPPG-PGPPLQGLAPRGLKTS----------APRPPCQPQPGP 106
+ +PP S HT PPG P P Q APR +S P+PP Q P
Sbjct: 589 SPKPPTRSPSPPTQHTGQPPGQPSAPSQLSAPRRYSSSLSPIQAPNHPPPQPPTQATPLM 648
Query: 107 H 107
H
Sbjct: 649 H 649
>gi|156071472 CD2 molecule [Homo sapiens]
Length = 351
Score = 40.8 bits (94), Expect = 0.001
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 10 PTADPGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTREPPKTRGSR 69
P P S Q + PPPP GH R PS R P + P + PP G++
Sbjct: 265 PHQIPASTPQNPATSQHPPPPP--GH---RSQAPSHRPPPPGHRVQHQPQKRPPAPSGTQ 319
Query: 70 GHLHTHPPGPGPPLQGLAPRGLKTSAPRP 98
H PP P P +Q P G ++ P
Sbjct: 320 VHQQKGPPLPRPRVQPKPPHGAAENSLSP 348
>gi|118918413 MICAL C-terminal like [Homo sapiens]
Length = 695
Score = 40.4 bits (93), Expect = 0.002
Identities = 48/202 (23%), Positives = 74/202 (36%), Gaps = 36/202 (17%)
Query: 9 SPTADPGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTREPPKTRGS 68
SP DP L ++ PP + + P P P T P ++ S
Sbjct: 2 SPPKDPSPSLPLPSSSSHSSSPPSSSSTSVSGNAPDGSSP-------PQMTASEPLSQVS 54
Query: 69 RGHLHTHPPGPGPPLQGLAPRGLKTSAPRPPCQPQPGPHKAKTKKIVF------ED---- 118
RGH P PP R + APR P PH K + + ED
Sbjct: 55 RGH-------PSPPTPNFRRRAVAQGAPRE--IPLYLPHHPKPEWAEYCLVSPGEDGLSD 105
Query: 119 --ELLSQALLGAKKPIGAIPKGHKPRPHPVPDYELKY------PPVSSERERSRYVAVFQ 170
E+ S A+ P+G I H+ PHP+ + + P +RE+ A +
Sbjct: 106 PAEMTSDECQPAEAPLGDIGSNHRD-PHPIWGKDRSWTGQELSPLAGEDREKGSTGARKE 164
Query: 171 DQYGEFLELQHEVGCAQAKLRQ 192
++ G L ++ ++G + L Q
Sbjct: 165 EEGGPVL-VKEKLGLKKLVLTQ 185
>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 40.0 bits (92), Expect = 0.002
Identities = 43/137 (31%), Positives = 52/137 (37%), Gaps = 19/137 (13%)
Query: 14 PGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTREPPKTRGSRGHLH 73
PG L G RP P A APR RP+A + LS + R P G G +
Sbjct: 36 PGPALVVAGLDGIRPAPAAAHPPAPRE-RPAAAR-LSALAAAQPRRRSPGPQGGGGGDI- 92
Query: 74 THPPGPGPPLQGLAPRGLKTSAPRPPCQPQPGPHKAKTKKIVFEDELLSQALLGAKKPI- 132
P PP L PRG AP P P PGP A+ L S G +P+
Sbjct: 93 ---ASPLPP--ALQPRG----APAVPAAPSPGPLPARPSSPPPRPSLPS----GPHRPVL 139
Query: 133 --GAIPKGHKPRPHPVP 147
A+ P P+P
Sbjct: 140 PPSALAAPRPPLARPLP 156
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 40.0 bits (92), Expect = 0.002
Identities = 37/139 (26%), Positives = 46/139 (33%), Gaps = 9/139 (6%)
Query: 16 SELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTREPPKTRGSR--GHLH 73
+ +Q + A P PPRA AP +A P P P R R
Sbjct: 97 ARVQPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAA 156
Query: 74 THPPGPGPPLQG-----LAPRGLKTSAPR--PPCQPQPGPHKAKTKKIVFEDELLSQALL 126
T PP PGP G AP AP P P GP +A + + L
Sbjct: 157 TAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQ 216
Query: 127 GAKKPIGAIPKGHKPRPHP 145
P P +P+P P
Sbjct: 217 PPAPPQQQQPPPPQPQPPP 235
Score = 39.7 bits (91), Expect = 0.003
Identities = 39/135 (28%), Positives = 46/135 (34%), Gaps = 22/135 (16%)
Query: 25 ARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTREPPKTRGSRGHLHTHPPGP-GPPL 83
A R PPR G P R P + + P PT PP PP P
Sbjct: 96 AARVQPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPP-----------PPAPVAAAA 144
Query: 84 QGLAPRGLKTSAPRPPC--QPQPGPHKAKTKKIVFEDELLSQALLGAKKPIGAIPKGHKP 141
APR +A PP QPGP + L + A P A P G P
Sbjct: 145 PARAPRAAAAAATAPPSPGPAQPGPRAQRAA------PLAAPPPAPAAPPAVAPPAG--P 196
Query: 142 RPHPVPDYELKYPPV 156
R P P + PP+
Sbjct: 197 RRAPPPAVAAREPPL 211
Score = 36.2 bits (82), Expect = 0.030
Identities = 32/116 (27%), Positives = 38/116 (32%), Gaps = 13/116 (11%)
Query: 4 PDGSASPTADPGSELQTLGQAARRPPPPRAG---HDAPRRTRPSARKPLSCFSRRPMPTR 60
P A+P A P + AA PPP AP AR P + + P
Sbjct: 102 PRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPS 161
Query: 61 EPPKTRGSRGH----LHTHPPGPGPPLQGLAPRGLKTSAP------RPPCQPQPGP 106
P G R L PP P P P G + + P PP P P P
Sbjct: 162 PGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQP 217
Score = 35.0 bits (79), Expect = 0.067
Identities = 32/110 (29%), Positives = 38/110 (34%), Gaps = 20/110 (18%)
Query: 4 PDGSASPTADPGSELQTLGQAARRPPPPRAGHDAPRRTR-------PSARKPLSCFSRRP 56
P +A+P P + AA PP P PR R P A +
Sbjct: 139 PVAAAAPARAP----RAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPA 194
Query: 57 MPTREPPKTRGSRGHLHTHPPGPGPPLQGLAPRGLKTSAPRPPCQPQPGP 106
P R PP +R PP P PP P+ PP QPQP P
Sbjct: 195 GPRRAPPPAVAAR-----EPPLPPPPQPPAPPQ----QQQPPPPQPQPPP 235
Score = 34.7 bits (78), Expect = 0.088
Identities = 25/85 (29%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
Query: 12 ADPGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTREPPKTRGSRGH 71
A PG Q A PP P A P P + +R P P PP+
Sbjct: 165 AQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREP-PLPPPPQPPAPPQQ 223
Query: 72 LHTHPPGPGPPLQGLAPRGLKTSAP 96
PP P PP +G A R + P
Sbjct: 224 QQPPPPQPQPPPEGGAVRAGGAARP 248
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 39.7 bits (91), Expect = 0.003
Identities = 33/111 (29%), Positives = 42/111 (37%), Gaps = 27/111 (24%)
Query: 10 PTADPGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTR--------- 60
P DP L+ +RPPPPR P R P R P +R P PTR
Sbjct: 1134 PQKDPAQPLEP-----KRPPPPRPVAP-PTRPAPPQRPPPPSGARSPAPTRKEFGGIGAP 1187
Query: 61 ----------EPPKTRGS--RGHLHTHPPGPGPPLQGLAPRGLKTSAPRPP 99
E PK+ G+ + ++ P P L G P G T+ P P
Sbjct: 1188 PSPGVARREMEAPKSPGTTRKDNIGRSQPSPQAGLAGPGPAGYSTARPTIP 1238
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 39.7 bits (91), Expect = 0.003
Identities = 33/111 (29%), Positives = 42/111 (37%), Gaps = 27/111 (24%)
Query: 10 PTADPGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTR--------- 60
P DP L+ +RPPPPR P R P R P +R P PTR
Sbjct: 1134 PQKDPAQPLEP-----KRPPPPRPVAP-PTRPAPPQRPPPPSGARSPAPTRKEFGGIGAP 1187
Query: 61 ----------EPPKTRGS--RGHLHTHPPGPGPPLQGLAPRGLKTSAPRPP 99
E PK+ G+ + ++ P P L G P G T+ P P
Sbjct: 1188 PSPGVARREMEAPKSPGTTRKDNIGRSQPSPQAGLAGPGPAGYSTARPTIP 1238
>gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 39.7 bits (91), Expect = 0.003
Identities = 35/97 (36%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 14 PGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTREPPKTRGSRGHLH 73
PG L G RP P A APR RP+A + LS + R P G G +
Sbjct: 36 PGPALVVAGLDGIRPAPAAAHPPAPRE-RPAAAR-LSALAAAQPRRRSPGPQGGGGGDI- 92
Query: 74 THPPGPGPPLQGLAPRGLKTSAPRPPCQPQPGPHKAK 110
P PP L PRG AP P P PGP A+
Sbjct: 93 ---ASPLPP--ALQPRG----APAVPAAPSPGPLPAR 120
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 39.7 bits (91), Expect = 0.003
Identities = 37/128 (28%), Positives = 41/128 (32%), Gaps = 19/128 (14%)
Query: 2 HNPDGSASPTADPGSELQTLGQAARRPPPPRAGHDAP------RRTRPSARKPLSCFSRR 55
H GS + A G G P PP AG P R PS R+PL
Sbjct: 61 HVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPA 120
Query: 56 PMPTREPPKTRGSRGHLHTHP----------PGPGPPLQGLAPRGLKTSA---PRPPCQP 102
P + P GS G P P P P + P L A P P P
Sbjct: 121 PPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGP 180
Query: 103 QPGPHKAK 110
PGP K
Sbjct: 181 GPGPGPGK 188
Score = 31.6 bits (70), Expect = 0.74
Identities = 42/159 (26%), Positives = 50/159 (31%), Gaps = 23/159 (14%)
Query: 12 ADPGSELQT---LGQAA----RRPPPPRAGHDAPRRTRPSARKPLSCFSRRP------MP 58
A PG+ +QT +G AA P PP A A P P RP P
Sbjct: 232 AAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPP 291
Query: 59 TRE---PPKTRGSRGHLHTHPPGPGPPLQGLAPRGLKTSAPRPPCQPQPGPHKAKTKKIV 115
T PP G P P P G A + P PG K++V
Sbjct: 292 TAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVV 351
Query: 116 FEDELLSQAL-------LGAKKPIGAIPKGHKPRPHPVP 147
+Q L A IG +G P P VP
Sbjct: 352 QAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVP 390
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 39.7 bits (91), Expect = 0.003
Identities = 48/172 (27%), Positives = 64/172 (37%), Gaps = 28/172 (16%)
Query: 3 NPDGSASPTADPGSELQTLGQA--ARRPPPPRAGHDA----------PRRTRPSARK--P 48
+P +P++ S L T Q RP P R A PR PS R P
Sbjct: 386 HPTQKTAPSSFTKSALPTQKQVPPTSRPVPARVSRPAEKPIQRNPGMPRPPPPSTRPLPP 445
Query: 49 LSCFSRRPMPT--REPPK-----TRGSRGHLHTHPPGPGPPLQGL-APRGLKTSAPRPPC 100
+ S++P+PT R K ++ + TH P P L AP T + RPP
Sbjct: 446 TTSSSKKPIPTLARTEAKITSHASKPASARTSTHKPPPFTALSSSPAPTPGSTRSTRPPA 505
Query: 101 QPQPGPHKAKTKKIVFEDELLSQALLGAKKPIG------AIPKGHKPRPHPV 146
P T + A G+KKPIG A PK +P P+
Sbjct: 506 TMVPPTSGTSTPRTAPAVPTPGSAPTGSKKPIGSEASKKAGPKSSPRKPVPL 557
Score = 31.6 bits (70), Expect = 0.74
Identities = 30/108 (27%), Positives = 41/108 (37%), Gaps = 13/108 (12%)
Query: 4 PDGSASPTADPGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTREPP 63
P GS P S+ + R+P P R G + + PLS + RP P R+P
Sbjct: 530 PTGSKKPIGSEASKKAGPKSSPRKPVPLRPG-------KAARDVPLSDLTTRPSP-RQPQ 581
Query: 64 KTRGSRGHLHTHP-----PGPGPPLQGLAPRGLKTSAPRPPCQPQPGP 106
++ + L P P P G + L S P P PGP
Sbjct: 582 PSQQTTPALVLAPAQFLSSSPRPTSSGYSIFHLAGSTPFPLLMGPPGP 629
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 39.7 bits (91), Expect = 0.003
Identities = 38/134 (28%), Positives = 47/134 (35%), Gaps = 9/134 (6%)
Query: 25 ARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTREPPKTRGSRGHLHTHPPGPGPPLQ 84
A P PP A P P+ S+ P+P P T G+ + P P P L
Sbjct: 1599 APSPAPPLA--PLPVLAPSPGAAPVLASSQTPVPVMAPSSTPGTSLASASPVPAPTPVL- 1655
Query: 85 GLAPRGLKTSAPRPPCQPQPGPHKAKTKKIVFEDELLSQALLGAKKPIGAIPKGHKPRPH 144
AP +T P P P P P A T+ + L LG P + G
Sbjct: 1656 --APSSTQTMLPAPVPSPLPSP--ASTQTLALAPAL--APTLGGSSPSQTLSLGTGNPQG 1709
Query: 145 PVPDYELKYPPVSS 158
P P L P SS
Sbjct: 1710 PFPTQTLSLTPASS 1723
Score = 32.3 bits (72), Expect = 0.44
Identities = 33/107 (30%), Positives = 43/107 (40%), Gaps = 13/107 (12%)
Query: 14 PGSELQTLGQAARRPPPPRAGHDA---PRRTRPSARKPLSCF--SRRPMPTREPPKTRGS 68
P L + A P PP +G A PR T R P +R PMPT P R
Sbjct: 1317 PRDGLTPVPPLAPAPRPPSSGLPAVLNPRPTLTPGRLPTPTLGTARAPMPT--PTLVRPL 1374
Query: 69 RGHLHTHPP-----GPGP-PLQGLAPRGLKTSAPRPPCQPQPGPHKA 109
+H+ P PG PL +P + +S P P P P P+ +
Sbjct: 1375 LKLVHSPSPEVSASAPGAAPLTISSPLHVPSSLPGPASSPMPIPNSS 1421
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 39.3 bits (90), Expect = 0.004
Identities = 37/126 (29%), Positives = 52/126 (41%), Gaps = 7/126 (5%)
Query: 80 GPPLQGLAPRGLKTSAPRPPCQPQPGPHKAKTKKI-VFEDELLSQALLGAKK-PIGAIPK 137
G PL+ AP+ L+ A P P+P P ++ K+ F+D LS L A P P
Sbjct: 615 GGPLRRKAPQSLEVMAIESPPPPEPTPADCQSPKMTTFQDSELSDELQAAMTGPAEVGPT 674
Query: 138 GHKPRPHPVPDYELKYPPVSSERERSRYVAVFQDQYGEFLELQHEVGCAQAKLRQLEALL 197
KP H P SS R+R+++ Q+ G+ G + R E LL
Sbjct: 675 TEKPSSHLPPTPRATTRQDSSLGGRARHMSSSQELLGD-----GPPGPSSPMSRSQEYLL 729
Query: 198 SSLPPP 203
P P
Sbjct: 730 DEGPAP 735
Score = 36.6 bits (83), Expect = 0.023
Identities = 41/160 (25%), Positives = 54/160 (33%), Gaps = 14/160 (8%)
Query: 4 PDGSASPTADPGSELQTLGQAARRPP----PPRAGHDAPRRTRPSA----RKPLSCFSRR 55
P G +SP + L G A PP P R GH R + P R+ L +
Sbjct: 714 PPGPSSPMSRSQEYLLDEGPAPGTPPREARPGRHGHSIKRASVPPVPGKPRQVLPPGTSH 773
Query: 56 PMPTREPPKTRGSRGHLHTHPPGPGPPLQGLAPRGLKTSAPRPPCQPQPGPHKAKTKKIV 115
P + P KTR P GP P + P P P+ P +
Sbjct: 774 FTPPQTPTKTRPGSPQALGGPHGPAPATAKVKPTPQLLPPTERPMSPRSLPQSPTHRGFA 833
Query: 116 FEDELLSQALLGAKKPIGAIPKGHKPRPHPVPDYELKYPP 155
+ +L Q + G +G G P P P L PP
Sbjct: 834 Y---VLPQPVEG---EVGPAAPGPAPPPVPTAVPTLCLPP 867
Score = 35.8 bits (81), Expect = 0.039
Identities = 37/128 (28%), Positives = 45/128 (35%), Gaps = 20/128 (15%)
Query: 34 GHDAPRRTRPSARKPLSCFSRRPMPTREPPKTR-GSRGHLHTH---PPGPGPPLQGLAPR 89
G P + P +R P P P + R G GH PP PG P Q L P
Sbjct: 711 GDGPPGPSSPMSRSQEYLLDEGPAPGTPPREARPGRHGHSIKRASVPPVPGKPRQVLPPG 770
Query: 90 GLKTSAPRPPCQPQPGPHKAKTKKIVFEDELLSQALLGAKKPIGAIPKGHKPRPHPVPDY 149
+ P+ P + +PG QAL G P A K KP P +P
Sbjct: 771 TSHFTPPQTPTKTRPGS---------------PQALGGPHGPAPATAK-VKPTPQLLPPT 814
Query: 150 ELKYPPVS 157
E P S
Sbjct: 815 ERPMSPRS 822
Score = 34.7 bits (78), Expect = 0.088
Identities = 39/152 (25%), Positives = 48/152 (31%), Gaps = 16/152 (10%)
Query: 10 PTADPGSELQTLGQAARRPPPPRAGH-----DAPRRTRPSARKPLSCFSRRPMPTRE--- 61
P P +E A P PP G P +P +P+ P PT +
Sbjct: 1192 PPPPPPAEPPPTDLAHLPPLPPPEGEARKPAKPPVSPKPVLTQPVPKLQGSPTPTSKKVP 1251
Query: 62 ---PPKTRGSRGHLHTHPPGPGPPLQGLAPRGLKTSA--PRPPCQPQPGPHKAKTKKIVF 116
P R H P P PP AP+ +K A P P P P A+
Sbjct: 1252 LPGPGSPEVKRAHGTPPPVSPKPPPPPTAPKPVKAVAGLPSGSAGPSPAPSPARQPPAAL 1311
Query: 117 EDELLSQALLG---AKKPIGAIPKGHKPRPHP 145
+ LG AK P P H P P
Sbjct: 1312 AKPPGTPPSLGASPAKPPSPGAPALHVPAKPP 1343
Score = 30.4 bits (67), Expect = 1.7
Identities = 30/124 (24%), Positives = 41/124 (33%), Gaps = 12/124 (9%)
Query: 1 MHNPDGSASPTADPGSELQTLGQAARRPPPPRAGHDAPRRTRPSARKPLSCFSRRPMPTR 60
+ +P AD S T Q + +A P P+ KP S P T
Sbjct: 631 IESPPPPEPTPADCQSPKMTTFQDSELSDELQAAMTGPAEVGPTTEKPSSHLPPTPRATT 690
Query: 61 EPPKTRGSRGH--------LHTHPPGPGPPLQGLAPRGLKTSAP---RPPCQPQPGPHKA 109
+ G R L PPGP P+ + L P PP + +PG H
Sbjct: 691 RQDSSLGGRARHMSSSQELLGDGPPGPSSPM-SRSQEYLLDEGPAPGTPPREARPGRHGH 749
Query: 110 KTKK 113
K+
Sbjct: 750 SIKR 753
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,399,472
Number of Sequences: 37866
Number of extensions: 1049301
Number of successful extensions: 8513
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 848
Number of HSP's that attempted gapping in prelim test: 6358
Number of HSP's gapped (non-prelim): 2503
length of query: 264
length of database: 18,247,518
effective HSP length: 100
effective length of query: 164
effective length of database: 14,460,918
effective search space: 2371590552
effective search space used: 2371590552
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.