Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MARVELD2 Sequence: fasta or formatted (558aa) NCBI GI: 84370252
Description:

MARVEL domain containing 2 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {457aa} MARVEL domain containing 2 isoform beta
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         31           3
 C cysteine            1.4          8           1
 D aspartate           6.1         34           2
 E glutamate           6.8         38           2
 F phenylalanine       3.9         22           2
 G glycine             5.9         33           2
 H histidine           2.5         14           2
 I isoleucine          5.0         28           3
 K lysine              5.9         33           4
 L leucine             7.9         44           3
 M methionine          2.9         16           1
 N asparagine          3.2         18           1
 P proline             7.5         42           4
 Q glutamine           2.9         16           2
 R arginine            7.0         39           2
 S serine              7.3         41           2
 T threonine           3.9         22           2
 V valine              6.6         37           2
 W tryptophan          1.6          9           2
 Y tyrosine            5.9         33           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   MARVEL domain containing 2 isoform 1 
MARVELD2              0.769   MARVEL domain containing 2 isoform beta 
OCEL1                 0.083   occludin/ELL domain containing 1 
ELL2                  0.058   elongation factor, RNA polymerase II, 2 
ELL                   0.057   elongation factor RNA polymerase II 
ELL3                  0.043   elongation factor RNA polymerase II-like 3 
OCLN                  0.040   occludin 
EIF5B                 0.015   eukaryotic translation initiation factor 5B 
EAF1                  0.015   ELL associated factor 1 
SYCP1                 0.013   synaptonemal complex protein 1 
WDR87                 0.011   NYD-SP11 protein 
PLLP                  0.011   plasmolipin 
UPK1A                 0.011   uroplakin 1A 
MARVELD3              0.011   MARVEL domain containing 3 isoform 1 
CMTM8                 0.011   CKLF-like MARVEL transmembrane domain containing 8 [...
ZFHX2                 0.011   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.011   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.011   PREDICTED: zinc finger homeobox 2 
KIAA1598              0.009   shootin1 isoform a 
DBN1                  0.009   drebrin 1 isoform b 
DBN1                  0.009   drebrin 1 isoform a 
LOC283685             0.008   PREDICTED: golgi autoantigen, golgin subfamily a-li...
IFT81                 0.008   intraflagellar transport 81-like isoform 1 
IFT81                 0.008   intraflagellar transport 81-like isoform 2 
IFT81                 0.008   intraflagellar transport 81-like isoform 1 
CCDC123               0.008   coiled-coil domain containing 123 
DYRK1B                0.008   dual-specificity tyrosine-(Y)-phosphorylation regulat...
DYRK1B                0.008   dual-specificity tyrosine-(Y)-phosphorylation regulat...
DYRK1B                0.008   dual-specificity tyrosine-(Y)-phosphorylation regulat...
WIPF2                 0.008   WIRE protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press