Guide to the Human Genome
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Name: CASKIN1 Sequence: fasta or formatted (1431aa) NCBI GI: 18079216
Description:

CASK interacting protein 1

Referenced in:

Ankyrin Family
PDZ Domain

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7        168          11
 C cysteine            0.7         10           1
 D aspartate           4.1         58           2
 E glutamate           6.0         86           2
 F phenylalanine       1.1         16           1
 G glycine             9.1        130           4
 H histidine           2.5         36           2
 I isoleucine          2.9         41           2
 K lysine              5.5         79           2
 L leucine             8.5        121           3
 M methionine          1.3         19           1
 N asparagine          2.2         31           2
 P proline            13.9        199           6
 Q glutamine           4.2         60           2
 R arginine            6.0         86           3
 S serine              8.2        117           4
 T threonine           4.9         70           2
 V valine              5.5         78           2
 W tryptophan          0.5          7           1
 Y tyrosine            1.3         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CASK interacting protein 1 
CASKIN2               0.293   cask-interacting protein 2 isoform a 
CASKIN2               0.258   cask-interacting protein 2 isoform b 
ANKS1B                0.063   cajalin 2 isoform a 
ANKS1A                0.057   ankyrin repeat and sterile alpha motif domain conta...
RIPK4                 0.035   ankyrin repeat domain 3 
ANK1                  0.035   ankyrin 1 isoform 9 
ANK1                  0.035   ankyrin 1 isoform 1 
ANK1                  0.035   ankyrin 1 isoform 3 
ANK1                  0.035   ankyrin 1 isoform 2 
ANK1                  0.035   ankyrin 1 isoform 4 
NACA                  0.034   nascent polypeptide-associated complex alpha subuni...
ANK2                  0.033   ankyrin 2 isoform 3 
ANK2                  0.033   ankyrin 2 isoform 2 
ANK2                  0.033   ankyrin 2 isoform 1 
ANKRD28               0.033   ankyrin repeat domain 28 
ANK3                  0.033   ankyrin 3 isoform 1 
FLJ22184              0.032   PREDICTED: hypothetical protein FLJ22184 
ANKK1                 0.031   ankyrin repeat and kinase domain containing 1 
TNKS2                 0.031   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
FLJ22184              0.031   PREDICTED: hypothetical protein LOC80164 
ANKRD44               0.031   ankyrin repeat domain 44 
PRR12                 0.031   proline rich 12 
DAPK1                 0.030   death-associated protein kinase 1 
INVS                  0.030   inversin isoform a 
INVS                  0.030   inversin isoform b 
ANKRD50               0.030   ankyrin repeat domain 50 
TNKS                  0.030   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
ANKDD1A               0.030   ankyrin repeat and death domain containing 1A 
ANKRD17               0.029   ankyrin repeat domain protein 17 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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