Guide to the Human Genome
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Name: ELL3 Sequence: fasta or formatted (397aa) NCBI GI: 13376768
Description:

elongation factor RNA polymerase II-like 3

Referenced in:

RNA Polymerase and General Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         25           2
 C cysteine            2.0          8           2
 D aspartate           4.5         18           1
 E glutamate          10.3         41           2
 F phenylalanine       2.5         10           1
 G glycine             5.8         23           2
 H histidine           3.0         12           1
 I isoleucine          3.5         14           2
 K lysine              3.5         14           2
 L leucine            10.8         43           4
 M methionine          1.3          5           1
 N asparagine          2.0          8           1
 P proline             6.0         24           1
 Q glutamine           8.3         33           2
 R arginine            8.8         35           2
 S serine              9.3         37           3
 T threonine           2.8         11           1
 V valine              4.8         19           1
 W tryptophan          1.3          5           1
 Y tyrosine            3.0         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   elongation factor RNA polymerase II-like 3 
ELL2                  0.136   elongation factor, RNA polymerase II, 2 
ELL                   0.130   elongation factor RNA polymerase II 
MARVELD2              0.063   MARVEL domain containing 2 isoform 1 
OCLN                  0.041   occludin 
OCEL1                 0.039   occludin/ELL domain containing 1 
RSPH3                 0.017   radial spoke 3 homolog 
SLC38A10              0.015   solute carrier family 38, member 10 isoform a 
SLC38A10              0.015   solute carrier family 38, member 10 isoform b 
CCDC102B              0.015   coiled-coil domain containing 102B 
CCDC102B              0.015   coiled-coil domain containing 102B 
GOLGA4                0.014   golgi autoantigen, golgin subfamily a, 4 
MYST3                 0.014   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.014   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.014   MYST histone acetyltransferase (monocytic leukemia)...
DNMT1                 0.013   DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho...
DNMT1                 0.013   DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo...
ZNF609                0.012   zinc finger protein 609 
LOC728080             0.012   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728080             0.012   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.012   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.012   PREDICTED: similar to Golgin subfamily A member 8-l...
FILIP1L               0.012   filamin A interacting protein 1-like isoform 3 [Hom...
FILIP1L               0.012   filamin A interacting protein 1-like isoform 2 [Hom...
FILIP1L               0.012   filamin A interacting protein 1-like isoform 1 [Hom...
ZNF853                0.010   zinc finger protein 853 
LOC727909             0.010   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.010   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC645202             0.010   PREDICTED: hypothetical protein LOC645202 
MAP1A                 0.010   microtubule-associated protein 1A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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