Guide to the Human Genome
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Name: SYN3 Sequence: fasta or formatted (580aa) NCBI GI: 209413752
Description:

synapsin III isoform IIIa

Referenced in:

Synapses

Other entries for this name:
alt prot [444aa] synapsin III isoform IIIc
alt prot [579aa] synapsin III isoform IIIg
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         42           2
 C cysteine            0.7          4           1
 D aspartate           4.0         23           2
 E glutamate           4.1         24           2
 F phenylalanine       3.4         20           2
 G glycine             6.9         40           2
 H histidine           2.2         13           1
 I isoleucine          3.8         22           2
 K lysine              5.0         29           2
 L leucine             7.2         42           2
 M methionine          3.6         21           1
 N asparagine          2.9         17           1
 P proline             9.7         56           3
 Q glutamine           7.8         45           3
 R arginine            5.3         31           3
 S serine             13.1         76           2
 T threonine           4.1         24           2
 V valine              5.5         32           3
 W tryptophan          0.9          5           1
 Y tyrosine            2.4         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synapsin III isoform IIIa 
SYN3                  0.995   synapsin III isoform IIIg 
SYN3                  0.756   synapsin III isoform IIIc 
SYN2                  0.550   synapsin II isoform IIa 
SYN1                  0.514   synapsin I isoform Ia 
SYN1                  0.500   synapsin I isoform Ib 
SYN2                  0.481   synapsin II isoform IIb 
GLTSCR1               0.032   glioma tumor suppressor candidate region gene 1 [Ho...
PRB2                  0.030   proline-rich protein BstNI subfamily 2 
PRB1                  0.030   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB4                  0.029   proline-rich protein BstNI subfamily 4 precursor [Ho...
ZYX                   0.028   zyxin 
ZYX                   0.028   zyxin 
SYNPO                 0.027   synaptopodin isoform A 
PRB1                  0.027   proline-rich protein BstNI subfamily 1 isoform 2 pre...
PRB1                  0.026   proline-rich protein BstNI subfamily 1 isoform 3 pre...
PRB3                  0.026   proline-rich protein BstNI subfamily 3 precursor [H...
PCLO                  0.025   piccolo isoform 2 
PCLO                  0.025   piccolo isoform 1 
SFPQ                  0.025   splicing factor proline/glutamine rich (polypyrimidin...
MUPCDH                0.025   mucin and cadherin-like isoform 1 
SRRM1                 0.025   serine/arginine repetitive matrix 1 
CREBBP                0.025   CREB binding protein isoform b 
CREBBP                0.025   CREB binding protein isoform a 
FLJ22184              0.024   PREDICTED: hypothetical protein FLJ22184 
MED25                 0.024   mediator complex subunit 25 
MEF2D                 0.024   myocyte enhancer factor 2D 
ZNF828                0.024   zinc finger protein 828 
FLJ22184              0.023   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.023   PREDICTED: hypothetical protein LOC80164 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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