PCDH1 24512

Name: PCDH1	Sequence: fasta or formatted (1060aa)		NCBI GI: 27754771
Description: protocadherin 1 isoform 1 precursor		Referenced in: Cadherins and Related Proteins
Other entries for this name: alt prot [1237aa] protocadherin 1 isoform 2 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.3 77 2 C cysteine 0.6 6 1 D aspartate 6.5 69 1 E glutamate 6.8 72 2 F phenylalanine 2.4 25 1 G glycine 7.8 83 2 H histidine 1.8 19 2 I isoleucine 4.2 45 1 K lysine 4.5 48 3 L leucine 9.5 101 5 M methionine 1.0 11 1 N asparagine 4.8 51 2 P proline 7.7 82 2 Q glutamine 5.0 53 2 R arginine 4.5 48 2 S serine 7.9 84 2 T threonine 5.9 63 3 V valine 8.3 88 3 W tryptophan 0.3 3 1 Y tyrosine 3.0 32 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 protocadherin 1 isoform 1 precursor PCDH1 0.971 protocadherin 1 isoform 2 precursor PCDH7 0.453 protocadherin 7 isoform b precursor PCDH7 0.452 protocadherin 7 isoform a precursor PCDH7 0.422 protocadherin 7 isoform c precursor PCDH9 0.323 protocadherin 9 isoform 2 precursor PCDH9 0.323 protocadherin 9 isoform 1 precursor PCDH11X 0.306 protocadherin 11 X-linked isoform d PCDH11X 0.306 protocadherin 11 X-linked isoform c PCDH11X 0.305 protocadherin 11 X-linked isoform a precursor PCDH11X 0.305 protocadherin 11 X-linked isoform b precursor PCDH11Y 0.302 protocadherin 11 Y-linked isoform c PCDH11Y 0.302 protocadherin 11 Y-linked isoform b PCDH11Y 0.302 protocadherin 11 Y-linked isoform a PCDH20 0.197 protocadherin 20 PCDH17 0.158 protocadherin 17 precursor DCHS1 0.155 dachsous 1 precursor FAT4 0.153 FAT tumor suppressor homolog 4 PCDHAC2 0.152 protocadherin alpha subfamily C, 2 isoform 1 precurso... PCDHAC2 0.152 protocadherin alpha subfamily C, 2 isoform 2 precurs... PCDH10 0.151 protocadherin 10 isoform 1 precursor PCDH10 0.151 protocadherin 10 isoform 2 precursor PCDHB7 0.151 protocadherin beta 7 precursor PCDHGB5 0.150 protocadherin gamma subfamily B, 5 isoform 2 precurs... PCDHGB5 0.150 protocadherin gamma subfamily B, 5 isoform 1 precurs... PCDHB11 0.150 protocadherin beta 11 precursor PCDHGB2 0.148 protocadherin gamma subfamily B, 2 isoform 1 precurs... PCDHGB2 0.148 protocadherin gamma subfamily B, 2 isoform 2 precurs... PCDHB12 0.148 protocadherin beta 12 precursor PCDHB15 0.148 protocadherin beta 15 precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.