Guide to the Human Genome
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Name: FAT1 Sequence: fasta or formatted (4588aa) NCBI GI: 66346693
Description:

FAT tumor suppressor 1 precursor

Referenced in:

Cadherins and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0        277           2
 C cysteine            1.3         60           2
 D aspartate           7.1        327           2
 E glutamate           6.9        315           2
 F phenylalanine       4.0        183           3
 G glycine             6.0        273           3
 H histidine           2.8        130           2
 I isoleucine          6.1        280           2
 K lysine              4.7        216           3
 L leucine             7.3        335           8
 M methionine          1.3         58           2
 N asparagine          4.8        222           2
 P proline             5.5        254           5
 Q glutamine           3.6        164           2
 R arginine            3.7        170           2
 S serine              8.8        402           3
 T threonine           7.0        321           3
 V valine              9.1        417           4
 W tryptophan          0.4         20           1
 Y tyrosine            3.6        164           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   FAT tumor suppressor 1 precursor 
FAT3                  0.505   FAT tumor suppressor homolog 3 
FAT2                  0.385   FAT tumor suppressor 2 precursor 
FAT4                  0.133   FAT tumor suppressor homolog 4 
DCHS1                 0.098   dachsous 1 precursor 
CDH23                 0.095   cadherin-like 23 isoform 1 precursor 
DCHS2                 0.076   dachsous 2 isoform 1 
CELSR2                0.052   cadherin EGF LAG seven-pass G-type receptor 2 
CELSR3                0.049   cadherin EGF LAG seven-pass G-type receptor 3 [Homo...
CELSR1                0.047   cadherin EGF LAG seven-pass G-type receptor 1 
DCHS2                 0.036   dachsous 2 isoform 2 
PCDH15                0.032   protocadherin 15 isoform CD1-4 precursor 
PCDH15                0.032   protocadherin 15 isoform CD1-10 precursor 
PCDH15                0.032   protocadherin 15 isoform CD3-2 precursor 
PCDH15                0.032   protocadherin 15 isoform CD3-1 precursor 
PCDH15                0.032   protocadherin 15 isoform CD2-2 precursor 
PCDH15                0.032   protocadherin 15 isoform CD1-9 precursor 
PCDH15                0.032   protocadherin 15 isoform CD1-7 precursor 
PCDH15                0.032   protocadherin 15 isoform CD1-2 precursor 
PCDH15                0.032   protocadherin 15 isoform CD1-1 precursor 
PCDH15                0.031   protocadherin 15 isoform CD2-1 precursor 
PCDH15                0.030   protocadherin 15 isoform CD1-8 precursor 
PCDH11Y               0.029   protocadherin 11 Y-linked isoform c 
PCDH11Y               0.029   protocadherin 11 Y-linked isoform b 
PCDH11Y               0.029   protocadherin 11 Y-linked isoform a 
PCDH11X               0.029   protocadherin 11 X-linked isoform a precursor 
PCDH11X               0.029   protocadherin 11 X-linked isoform d 
PCDH11X               0.029   protocadherin 11 X-linked isoform c 
PCDH11X               0.029   protocadherin 11 X-linked isoform b precursor 
PCDH1                 0.028   protocadherin 1 isoform 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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