PCDH11Y 4184

Name: PCDH11Y	Sequence: fasta or formatted (1048aa)		NCBI GI: 14589944
Description: protocadherin 11 Y-linked isoform b		Referenced in: Cadherins and Related Proteins Y-linked Genes
Other entries for this name: alt prot [1037aa] protocadherin 11 Y-linked isoform a alt prot [1340aa] protocadherin 11 Y-linked isoform c
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.5 58 2 C cysteine 1.0 11 1 D aspartate 7.3 76 2 E glutamate 6.0 63 2 F phenylalanine 3.9 41 1 G glycine 4.1 43 2 H histidine 1.8 19 2 I isoleucine 7.2 75 2 K lysine 5.4 57 8 L leucine 8.5 89 3 M methionine 1.5 16 2 N asparagine 7.2 75 2 P proline 6.4 67 2 Q glutamine 2.7 28 1 R arginine 3.6 38 2 S serine 7.1 74 5 T threonine 7.8 82 3 V valine 10.2 107 4 W tryptophan 0.2 2 1 Y tyrosine 2.6 27 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 protocadherin 11 Y-linked isoform b PCDH11Y 0.996 protocadherin 11 Y-linked isoform c PCDH11Y 0.982 protocadherin 11 Y-linked isoform a PCDH11X 0.950 protocadherin 11 X-linked isoform b precursor PCDH11X 0.945 protocadherin 11 X-linked isoform a precursor PCDH11X 0.945 protocadherin 11 X-linked isoform d PCDH11X 0.945 protocadherin 11 X-linked isoform c PCDH9 0.562 protocadherin 9 isoform 2 precursor PCDH9 0.562 protocadherin 9 isoform 1 precursor PCDH1 0.307 protocadherin 1 isoform 2 precursor PCDH1 0.307 protocadherin 1 isoform 1 precursor PCDH20 0.292 protocadherin 20 PCDH7 0.284 protocadherin 7 isoform b precursor PCDH7 0.284 protocadherin 7 isoform a precursor PCDH7 0.272 protocadherin 7 isoform c precursor PCDHGA10 0.166 protocadherin gamma subfamily A, 10 isoform 1 precur... PCDHGA10 0.166 protocadherin gamma subfamily A, 10 isoform 2 precur... PCDH18 0.163 protocadherin 18 precursor PCDH19 0.161 protocadherin 19 isoform a PCDH19 0.161 protocadherin 19 isoform b PCDH17 0.161 protocadherin 17 precursor PCDHGA12 0.160 protocadherin gamma subfamily A, 12 isoform 1 precurs... PCDHGA12 0.160 protocadherin gamma subfamily A, 12 isoform 2 precur... PCDHGB1 0.158 protocadherin gamma subfamily B, 1 isoform 2 precurs... PCDHGB1 0.158 protocadherin gamma subfamily B, 1 isoform 1 precurs... PCDH10 0.158 protocadherin 10 isoform 1 precursor PCDH10 0.158 protocadherin 10 isoform 2 precursor PCDHGA7 0.157 protocadherin gamma subfamily A, 7 isoform 1 precurs... PCDHGA7 0.157 protocadherin gamma subfamily A, 7 isoform 2 precurs... PCDHGA11 0.156 protocadherin gamma subfamily A, 11 isoform 2 precur... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.