PCDH15 13777

Name: PCDH15	Sequence: fasta or formatted (1957aa)		NCBI GI: 218505777
Description: protocadherin 15 isoform CD1-2 precursor		Referenced in: Cadherins and Related Proteins Auditory and Vestibular Functions
Other entries for this name: alt prot [1955aa] protocadherin 15 isoform CD1-4 precursor alt prot [1962aa] protocadherin 15 isoform CD1-1 precursor alt prot [1886aa] protocadherin 15 isoform CD1-6 precursor alt prot [1952aa] protocadherin 15 isoform CD1-7 precursor alt prot [1915aa] protocadherin 15 isoform CD1-8 precursor alt prot [1935aa] protocadherin 15 isoform CD1-9 precursor alt prot [1790aa] protocadherin 15 isoform CD2-1 precursor alt prot [1539aa] protocadherin 15 isoform CD2-2 precursor alt prot [1682aa] protocadherin 15 isoform CD3-1 precursor alt prot [1677aa] protocadherin 15 isoform CD3-2 precursor alt prot [1932aa] protocadherin 15 isoform CD1-10 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.8 114 3 C cysteine 1.2 24 2 D aspartate 6.0 118 3 E glutamate 6.4 125 3 F phenylalanine 3.8 74 2 G glycine 5.1 100 2 H histidine 1.5 30 1 I isoleucine 6.9 136 3 K lysine 4.0 78 2 L leucine 8.4 165 2 M methionine 1.7 34 1 N asparagine 5.1 100 2 P proline 9.0 177 9 Q glutamine 3.7 72 2 R arginine 4.8 94 2 S serine 7.4 144 3 T threonine 7.6 149 5 V valine 7.8 153 3 W tryptophan 0.2 4 1 Y tyrosine 3.4 66 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 protocadherin 15 isoform CD1-2 precursor PCDH15 0.998 protocadherin 15 isoform CD1-1 precursor PCDH15 0.997 protocadherin 15 isoform CD1-4 precursor PCDH15 0.994 protocadherin 15 isoform CD1-7 precursor PCDH15 0.985 protocadherin 15 isoform CD1-9 precursor PCDH15 0.983 protocadherin 15 isoform CD1-10 precursor PCDH15 0.971 protocadherin 15 isoform CD1-8 precursor PCDH15 0.739 protocadherin 15 isoform CD3-2 precursor PCDH15 0.739 protocadherin 15 isoform CD2-2 precursor PCDH15 0.737 protocadherin 15 isoform CD3-1 precursor PCDH15 0.735 protocadherin 15 isoform CD2-1 precursor PCDH15 0.666 protocadherin 15 isoform CD1-6 precursor FAT4 0.082 FAT tumor suppressor homolog 4 FAT3 0.077 FAT tumor suppressor homolog 3 FAT1 0.074 FAT tumor suppressor 1 precursor CELSR2 0.069 cadherin EGF LAG seven-pass G-type receptor 2 DCHS1 0.068 dachsous 1 precursor CDH23 0.068 cadherin-like 23 isoform 1 precursor DCHS2 0.066 dachsous 2 isoform 1 CELSR3 0.065 cadherin EGF LAG seven-pass G-type receptor 3 [Homo... CELSR1 0.062 cadherin EGF LAG seven-pass G-type receptor 1 FAT2 0.062 FAT tumor suppressor 2 precursor DCHS2 0.050 dachsous 2 isoform 2 PCDH9 0.046 protocadherin 9 isoform 2 precursor PCDH9 0.046 protocadherin 9 isoform 1 precursor PCDH11Y 0.044 protocadherin 11 Y-linked isoform c PCDH11Y 0.044 protocadherin 11 Y-linked isoform b PCDH11Y 0.044 protocadherin 11 Y-linked isoform a PCDH11X 0.044 protocadherin 11 X-linked isoform a precursor PCDH11X 0.044 protocadherin 11 X-linked isoform d Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.