Guide to the Human Genome
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Name: PCDH15 Sequence: fasta or formatted (1952aa) NCBI GI: 218505781
Description:

protocadherin 15 isoform CD1-7 precursor

Referenced in:

Cadherins and Related Proteins
Auditory and Vestibular Functions

Other entries for this name:
alt prot [1955aa] protocadherin 15 isoform CD1-4 precursor
alt prot [1962aa] protocadherin 15 isoform CD1-1 precursor
alt prot [1957aa] protocadherin 15 isoform CD1-2 precursor
alt prot [1886aa] protocadherin 15 isoform CD1-6 precursor
alt prot [1915aa] protocadherin 15 isoform CD1-8 precursor
alt prot [1935aa] protocadherin 15 isoform CD1-9 precursor
alt prot [1790aa] protocadherin 15 isoform CD2-1 precursor
alt prot [1539aa] protocadherin 15 isoform CD2-2 precursor
alt prot [1682aa] protocadherin 15 isoform CD3-1 precursor
alt prot [1677aa] protocadherin 15 isoform CD3-2 precursor
alt prot [1932aa] protocadherin 15 isoform CD1-10 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8        114           3
 C cysteine            1.2         24           2
 D aspartate           6.0        118           3
 E glutamate           6.4        125           3
 F phenylalanine       3.7         73           2
 G glycine             5.1        100           2
 H histidine           1.5         29           1
 I isoleucine          7.0        137           3
 K lysine              3.9         77           2
 L leucine             8.5        165           2
 M methionine          1.7         33           1
 N asparagine          5.1         99           2
 P proline             9.1        177           9
 Q glutamine           3.7         72           2
 R arginine            4.8         94           2
 S serine              7.4        144           3
 T threonine           7.6        149           5
 V valine              7.8        152           3
 W tryptophan          0.2          4           1
 Y tyrosine            3.4         66           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protocadherin 15 isoform CD1-7 precursor 
PCDH15                0.998   protocadherin 15 isoform CD1-4 precursor 
PCDH15                0.997   protocadherin 15 isoform CD1-2 precursor 
PCDH15                0.995   protocadherin 15 isoform CD1-1 precursor 
PCDH15                0.984   protocadherin 15 isoform CD1-10 precursor 
PCDH15                0.982   protocadherin 15 isoform CD1-9 precursor 
PCDH15                0.977   protocadherin 15 isoform CD1-8 precursor 
PCDH15                0.737   protocadherin 15 isoform CD3-2 precursor 
PCDH15                0.737   protocadherin 15 isoform CD2-2 precursor 
PCDH15                0.735   protocadherin 15 isoform CD3-1 precursor 
PCDH15                0.734   protocadherin 15 isoform CD2-1 precursor 
PCDH15                0.662   protocadherin 15 isoform CD1-6 precursor 
FAT4                  0.082   FAT tumor suppressor homolog 4 
FAT3                  0.077   FAT tumor suppressor homolog 3 
FAT1                  0.074   FAT tumor suppressor 1 precursor 
CELSR2                0.069   cadherin EGF LAG seven-pass G-type receptor 2 
DCHS1                 0.069   dachsous 1 precursor 
CDH23                 0.068   cadherin-like 23 isoform 1 precursor 
DCHS2                 0.066   dachsous 2 isoform 1 
CELSR3                0.065   cadherin EGF LAG seven-pass G-type receptor 3 [Homo...
CELSR1                0.063   cadherin EGF LAG seven-pass G-type receptor 1 
FAT2                  0.062   FAT tumor suppressor 2 precursor 
DCHS2                 0.050   dachsous 2 isoform 2 
PCDH9                 0.047   protocadherin 9 isoform 2 precursor 
PCDH9                 0.047   protocadherin 9 isoform 1 precursor 
PCDH11Y               0.045   protocadherin 11 Y-linked isoform c 
PCDH11Y               0.045   protocadherin 11 Y-linked isoform b 
PCDH11Y               0.045   protocadherin 11 Y-linked isoform a 
PCDH11X               0.044   protocadherin 11 X-linked isoform a precursor 
PCDH11X               0.044   protocadherin 11 X-linked isoform d 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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