Guide to the Human Genome
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Name: DCHS2 Sequence: fasta or formatted (2916aa) NCBI GI: 47059046
Description:

dachsous 2 isoform 1

Referenced in:

Cadherins and Related Proteins

Other entries for this name:
alt prot [1369aa] dachsous 2 isoform 2
alt prot [709aa] dachsous 2 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8        169           3
 C cysteine            1.0         30           1
 D aspartate           7.1        208           3
 E glutamate           7.1        206           2
 F phenylalanine       4.6        134           2
 G glycine             5.4        158           3
 H histidine           2.7         80           2
 I isoleucine          6.2        181           2
 K lysine              3.9        113           2
 L leucine             9.1        265           3
 M methionine          1.5         43           1
 N asparagine          4.5        132           2
 P proline             5.0        147           3
 Q glutamine           3.9        113           2
 R arginine            3.4         99           2
 S serine              9.7        283           3
 T threonine           7.2        209           3
 V valine              8.3        243           3
 W tryptophan          0.5         14           1
 Y tyrosine            3.1         89           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   dachsous 2 isoform 1 
DCHS1                 0.239   dachsous 1 precursor 
DCHS2                 0.177   dachsous 2 isoform 2 
FAT4                  0.146   FAT tumor suppressor homolog 4 
CDH23                 0.124   cadherin-like 23 isoform 1 precursor 
FAT1                  0.114   FAT tumor suppressor 1 precursor 
FAT3                  0.112   FAT tumor suppressor homolog 3 
FAT2                  0.110   FAT tumor suppressor 2 precursor 
CELSR2                0.065   cadherin EGF LAG seven-pass G-type receptor 2 
CELSR3                0.059   cadherin EGF LAG seven-pass G-type receptor 3 [Homo...
CELSR1                0.058   cadherin EGF LAG seven-pass G-type receptor 1 
PCDH15                0.045   protocadherin 15 isoform CD1-8 precursor 
PCDH15                0.045   protocadherin 15 isoform CD1-4 precursor 
PCDH15                0.045   protocadherin 15 isoform CD1-10 precursor 
PCDH15                0.045   protocadherin 15 isoform CD3-2 precursor 
PCDH15                0.045   protocadherin 15 isoform CD3-1 precursor 
PCDH15                0.045   protocadherin 15 isoform CD2-2 precursor 
PCDH15                0.045   protocadherin 15 isoform CD1-9 precursor 
PCDH15                0.045   protocadherin 15 isoform CD1-7 precursor 
PCDH15                0.045   protocadherin 15 isoform CD1-2 precursor 
PCDH15                0.045   protocadherin 15 isoform CD1-1 precursor 
PCDH15                0.043   protocadherin 15 isoform CD2-1 precursor 
PCDH15                0.042   protocadherin 15 isoform CD1-6 precursor 
PCDH1                 0.041   protocadherin 1 isoform 2 precursor 
PCDH1                 0.041   protocadherin 1 isoform 1 precursor 
PCDH9                 0.041   protocadherin 9 isoform 2 precursor 
PCDH9                 0.041   protocadherin 9 isoform 1 precursor 
PCDH11X               0.039   protocadherin 11 X-linked isoform a precursor 
PCDH11X               0.039   protocadherin 11 X-linked isoform d 
PCDH11X               0.039   protocadherin 11 X-linked isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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