Guide to the Human Genome
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Name: PCDH15 Sequence: fasta or formatted (1677aa) NCBI GI: 218505793
Description:

protocadherin 15 isoform CD3-2 precursor

Referenced in:

Cadherins and Related Proteins
Auditory and Vestibular Functions

Other entries for this name:
alt prot [1955aa] protocadherin 15 isoform CD1-4 precursor
alt prot [1962aa] protocadherin 15 isoform CD1-1 precursor
alt prot [1957aa] protocadherin 15 isoform CD1-2 precursor
alt prot [1886aa] protocadherin 15 isoform CD1-6 precursor
alt prot [1952aa] protocadherin 15 isoform CD1-7 precursor
alt prot [1915aa] protocadherin 15 isoform CD1-8 precursor
alt prot [1935aa] protocadherin 15 isoform CD1-9 precursor
alt prot [1790aa] protocadherin 15 isoform CD2-1 precursor
alt prot [1539aa] protocadherin 15 isoform CD2-2 precursor
alt prot [1682aa] protocadherin 15 isoform CD3-1 precursor
alt prot [1932aa] protocadherin 15 isoform CD1-10 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5        109           3
 C cysteine            0.8         14           2
 D aspartate           6.9        115           3
 E glutamate           6.8        114           4
 F phenylalanine       3.5         59           2
 G glycine             5.9         99           2
 H histidine           1.6         27           2
 I isoleucine          7.1        119           3
 K lysine              3.9         65           2
 L leucine             8.2        138           2
 M methionine          1.8         31           1
 N asparagine          5.2         87           2
 P proline             7.2        121           9
 Q glutamine           3.3         56           2
 R arginine            5.1         86           3
 S serine              5.4         91           3
 T threonine           7.6        127           5
 V valine              8.7        146           3
 W tryptophan          0.3          5           1
 Y tyrosine            4.1         68           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protocadherin 15 isoform CD3-2 precursor 
PCDH15                0.998   protocadherin 15 isoform CD3-1 precursor 
PCDH15                0.885   protocadherin 15 isoform CD2-1 precursor 
PCDH15                0.866   protocadherin 15 isoform CD2-2 precursor 
PCDH15                0.865   protocadherin 15 isoform CD1-2 precursor 
PCDH15                0.864   protocadherin 15 isoform CD1-4 precursor 
PCDH15                0.863   protocadherin 15 isoform CD1-1 precursor 
PCDH15                0.860   protocadherin 15 isoform CD1-7 precursor 
PCDH15                0.848   protocadherin 15 isoform CD1-9 precursor 
PCDH15                0.845   protocadherin 15 isoform CD1-10 precursor 
PCDH15                0.833   protocadherin 15 isoform CD1-8 precursor 
PCDH15                0.474   protocadherin 15 isoform CD1-6 precursor 
FAT4                  0.096   FAT tumor suppressor homolog 4 
FAT3                  0.090   FAT tumor suppressor homolog 3 
FAT1                  0.087   FAT tumor suppressor 1 precursor 
CELSR2                0.081   cadherin EGF LAG seven-pass G-type receptor 2 
DCHS1                 0.080   dachsous 1 precursor 
CDH23                 0.080   cadherin-like 23 isoform 1 precursor 
DCHS2                 0.077   dachsous 2 isoform 1 
CELSR3                0.076   cadherin EGF LAG seven-pass G-type receptor 3 [Homo...
CELSR1                0.073   cadherin EGF LAG seven-pass G-type receptor 1 
FAT2                  0.072   FAT tumor suppressor 2 precursor 
DCHS2                 0.059   dachsous 2 isoform 2 
PCDH9                 0.054   protocadherin 9 isoform 2 precursor 
PCDH9                 0.054   protocadherin 9 isoform 1 precursor 
PCDH11Y               0.052   protocadherin 11 Y-linked isoform c 
PCDH11Y               0.052   protocadherin 11 Y-linked isoform b 
PCDH11Y               0.052   protocadherin 11 Y-linked isoform a 
PCDH11X               0.051   protocadherin 11 X-linked isoform a precursor 
PCDH11X               0.051   protocadherin 11 X-linked isoform d 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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