PCDH11Y 4183

Name: PCDH11Y	Sequence: fasta or formatted (1037aa)		NCBI GI: 14589942
Description: protocadherin 11 Y-linked isoform a		Referenced in: Cadherins and Related Proteins Gene Families Y-linked Genes
Other entries for this name: alt prot [1048aa] protocadherin 11 Y-linked isoform b alt prot [1340aa] protocadherin 11 Y-linked isoform c
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.6 58 2 C cysteine 1.1 11 1 D aspartate 7.4 77 2 E glutamate 6.1 63 2 F phenylalanine 3.9 40 1 G glycine 4.1 43 2 H histidine 1.8 19 2 I isoleucine 7.1 74 2 K lysine 5.5 57 8 L leucine 8.1 84 3 M methionine 1.5 16 2 N asparagine 7.3 76 2 P proline 6.4 66 2 Q glutamine 2.7 28 1 R arginine 3.6 37 2 S serine 6.8 70 5 T threonine 8.0 83 3 V valine 10.2 106 4 W tryptophan 0.2 2 1 Y tyrosine 2.6 27 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 protocadherin 11 Y-linked isoform a PCDH11Y 0.991 protocadherin 11 Y-linked isoform b PCDH11Y 0.987 protocadherin 11 Y-linked isoform c PCDH11X 0.958 protocadherin 11 X-linked isoform b precursor PCDH11X 0.953 protocadherin 11 X-linked isoform a precursor PCDH11X 0.953 protocadherin 11 X-linked isoform d PCDH11X 0.953 protocadherin 11 X-linked isoform c PCDH9 0.567 protocadherin 9 isoform 2 precursor PCDH9 0.567 protocadherin 9 isoform 1 precursor PCDH1 0.310 protocadherin 1 isoform 2 precursor PCDH1 0.310 protocadherin 1 isoform 1 precursor PCDH20 0.294 protocadherin 20 PCDH7 0.287 protocadherin 7 isoform b precursor PCDH7 0.287 protocadherin 7 isoform a precursor PCDH7 0.275 protocadherin 7 isoform c precursor PCDHGA10 0.167 protocadherin gamma subfamily A, 10 isoform 1 precur... PCDHGA10 0.167 protocadherin gamma subfamily A, 10 isoform 2 precur... PCDH18 0.165 protocadherin 18 precursor PCDH19 0.162 protocadherin 19 isoform a PCDH19 0.162 protocadherin 19 isoform b PCDH17 0.162 protocadherin 17 precursor PCDHGA12 0.161 protocadherin gamma subfamily A, 12 isoform 1 precurs... PCDHGA12 0.161 protocadherin gamma subfamily A, 12 isoform 2 precur... PCDHGB1 0.160 protocadherin gamma subfamily B, 1 isoform 2 precurs... PCDHGB1 0.160 protocadherin gamma subfamily B, 1 isoform 1 precurs... PCDH10 0.159 protocadherin 10 isoform 1 precursor PCDH10 0.159 protocadherin 10 isoform 2 precursor PCDHGA7 0.158 protocadherin gamma subfamily A, 7 isoform 1 precurs... PCDHGA7 0.158 protocadherin gamma subfamily A, 7 isoform 2 precurs... PCDHGA11 0.158 protocadherin gamma subfamily A, 11 isoform 2 precur... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.