Guide to the Human Genome
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Name: PCDH15 Sequence: fasta or formatted (1539aa) NCBI GI: 218505789
Description:

protocadherin 15 isoform CD2-2 precursor

Referenced in:

Cadherins and Related Proteins
Auditory and Vestibular Functions

Other entries for this name:
alt prot [1955aa] protocadherin 15 isoform CD1-4 precursor
alt prot [1962aa] protocadherin 15 isoform CD1-1 precursor
alt prot [1957aa] protocadherin 15 isoform CD1-2 precursor
alt prot [1886aa] protocadherin 15 isoform CD1-6 precursor
alt prot [1952aa] protocadherin 15 isoform CD1-7 precursor
alt prot [1915aa] protocadherin 15 isoform CD1-8 precursor
alt prot [1935aa] protocadherin 15 isoform CD1-9 precursor
alt prot [1790aa] protocadherin 15 isoform CD2-1 precursor
alt prot [1682aa] protocadherin 15 isoform CD3-1 precursor
alt prot [1677aa] protocadherin 15 isoform CD3-2 precursor
alt prot [1932aa] protocadherin 15 isoform CD1-10 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         99           3
 C cysteine            0.8         13           2
 D aspartate           7.1        109           3
 E glutamate           5.9         91           3
 F phenylalanine       3.6         55           2
 G glycine             5.8         89           2
 H histidine           1.4         21           1
 I isoleucine          7.4        114           3
 K lysine              4.1         63           2
 L leucine             8.5        131           2
 M methionine          2.1         32           1
 N asparagine          5.1         79           2
 P proline             7.0        107           9
 Q glutamine           3.4         53           2
 R arginine            5.4         83           2
 S serine              5.2         80           3
 T threonine           7.4        114           5
 V valine              9.0        138           3
 W tryptophan          0.3          4           1
 Y tyrosine            4.2         64           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protocadherin 15 isoform CD2-2 precursor 
PCDH15                0.947   protocadherin 15 isoform CD3-2 precursor 
PCDH15                0.946   protocadherin 15 isoform CD1-2 precursor 
PCDH15                0.945   protocadherin 15 isoform CD3-1 precursor 
PCDH15                0.945   protocadherin 15 isoform CD1-4 precursor 
PCDH15                0.944   protocadherin 15 isoform CD1-1 precursor 
PCDH15                0.942   protocadherin 15 isoform CD2-1 precursor 
PCDH15                0.941   protocadherin 15 isoform CD1-7 precursor 
PCDH15                0.928   protocadherin 15 isoform CD1-9 precursor 
PCDH15                0.924   protocadherin 15 isoform CD1-10 precursor 
PCDH15                0.911   protocadherin 15 isoform CD1-8 precursor 
PCDH15                0.518   protocadherin 15 isoform CD1-6 precursor 
FAT4                  0.105   FAT tumor suppressor homolog 4 
FAT3                  0.098   FAT tumor suppressor homolog 3 
FAT1                  0.095   FAT tumor suppressor 1 precursor 
CELSR2                0.088   cadherin EGF LAG seven-pass G-type receptor 2 
DCHS1                 0.087   dachsous 1 precursor 
CDH23                 0.087   cadherin-like 23 isoform 1 precursor 
DCHS2                 0.084   dachsous 2 isoform 1 
CELSR3                0.083   cadherin EGF LAG seven-pass G-type receptor 3 [Homo...
CELSR1                0.080   cadherin EGF LAG seven-pass G-type receptor 1 
FAT2                  0.079   FAT tumor suppressor 2 precursor 
DCHS2                 0.064   dachsous 2 isoform 2 
PCDH9                 0.060   protocadherin 9 isoform 2 precursor 
PCDH9                 0.060   protocadherin 9 isoform 1 precursor 
PCDH11Y               0.057   protocadherin 11 Y-linked isoform c 
PCDH11Y               0.057   protocadherin 11 Y-linked isoform b 
PCDH11Y               0.057   protocadherin 11 Y-linked isoform a 
PCDH11X               0.056   protocadherin 11 X-linked isoform a precursor 
PCDH11X               0.056   protocadherin 11 X-linked isoform d 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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