Guide to the Human Genome
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Name: CDH23 Sequence: fasta or formatted (3354aa) NCBI GI: 189571674
Description:

cadherin-like 23 isoform 1 precursor

Referenced in:

Cadherins and Related Proteins
Auditory and Vestibular Functions
PDZ Domain

Other entries for this name:
alt prot [530aa] cadherin-like 23 isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6        221           2
 C cysteine            0.4         14           1
 D aspartate           8.1        272           3
 E glutamate           6.0        202           3
 F phenylalanine       3.9        130           2
 G glycine             6.4        213           3
 H histidine           1.7         58           2
 I isoleucine          6.9        231           3
 K lysine              2.4         79           2
 L leucine             9.0        303           4
 M methionine          1.4         48           2
 N asparagine          6.0        202           2
 P proline             5.7        190           2
 Q glutamine           3.1        103           3
 R arginine            5.1        172           2
 S serine              6.4        213           3
 T threonine           7.6        256           3
 V valine              9.5        319           3
 W tryptophan          0.4         15           1
 Y tyrosine            3.4        113           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cadherin-like 23 isoform 1 precursor 
FAT4                  0.157   FAT tumor suppressor homolog 4 
CDH23                 0.142   cadherin-like 23 isoform 2 precursor 
DCHS1                 0.136   dachsous 1 precursor 
FAT1                  0.132   FAT tumor suppressor 1 precursor 
FAT3                  0.132   FAT tumor suppressor homolog 3 
FAT2                  0.128   FAT tumor suppressor 2 precursor 
DCHS2                 0.108   dachsous 2 isoform 1 
CELSR2                0.063   cadherin EGF LAG seven-pass G-type receptor 2 
CELSR1                0.059   cadherin EGF LAG seven-pass G-type receptor 1 
CELSR3                0.056   cadherin EGF LAG seven-pass G-type receptor 3 [Homo...
DCHS2                 0.051   dachsous 2 isoform 2 
PCDH24                0.045   protocadherin LKC precursor 
PCDH15                0.042   protocadherin 15 isoform CD2-1 precursor 
PCDH15                0.042   protocadherin 15 isoform CD1-8 precursor 
PCDH15                0.040   protocadherin 15 isoform CD1-4 precursor 
PCDH15                0.040   protocadherin 15 isoform CD1-10 precursor 
PCDH15                0.040   protocadherin 15 isoform CD3-2 precursor 
PCDH15                0.040   protocadherin 15 isoform CD3-1 precursor 
PCDH15                0.040   protocadherin 15 isoform CD2-2 precursor 
PCDH15                0.040   protocadherin 15 isoform CD1-9 precursor 
PCDH15                0.040   protocadherin 15 isoform CD1-7 precursor 
PCDH15                0.040   protocadherin 15 isoform CD1-2 precursor 
PCDH15                0.040   protocadherin 15 isoform CD1-1 precursor 
PCDH9                 0.039   protocadherin 9 isoform 2 precursor 
PCDH9                 0.039   protocadherin 9 isoform 1 precursor 
PCDH15                0.039   protocadherin 15 isoform CD1-6 precursor 
PCDH21                0.039   protocadherin 21 precursor 
PCDH1                 0.036   protocadherin 1 isoform 2 precursor 
PCDH1                 0.036   protocadherin 1 isoform 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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