PCDH1 24513

Name: PCDH1	Sequence: fasta or formatted (1237aa)		NCBI GI: 27754773
Description: protocadherin 1 isoform 2 precursor		Referenced in: Cadherins and Related Proteins
Other entries for this name: alt prot [1060aa] protocadherin 1 isoform 1 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.4 91 2 C cysteine 0.8 10 1 D aspartate 6.5 81 1 E glutamate 7.0 86 2 F phenylalanine 2.3 29 1 G glycine 7.5 93 2 H histidine 1.9 24 2 I isoleucine 3.8 47 1 K lysine 4.4 54 3 L leucine 9.2 114 5 M methionine 1.1 14 1 N asparagine 4.3 53 2 P proline 8.1 100 2 Q glutamine 4.8 59 2 R arginine 4.9 60 2 S serine 9.2 114 3 T threonine 6.4 79 3 V valine 7.3 90 3 W tryptophan 0.2 2 1 Y tyrosine 3.0 37 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 protocadherin 1 isoform 2 precursor PCDH1 0.829 protocadherin 1 isoform 1 precursor PCDH7 0.438 protocadherin 7 isoform c precursor PCDH7 0.387 protocadherin 7 isoform a precursor PCDH7 0.386 protocadherin 7 isoform b precursor PCDH9 0.297 protocadherin 9 isoform 2 precursor PCDH9 0.292 protocadherin 9 isoform 1 precursor PCDH11X 0.274 protocadherin 11 X-linked isoform d PCDH11Y 0.274 protocadherin 11 Y-linked isoform c PCDH11X 0.273 protocadherin 11 X-linked isoform c PCDH11X 0.261 protocadherin 11 X-linked isoform b precursor PCDH11X 0.260 protocadherin 11 X-linked isoform a precursor PCDH11Y 0.258 protocadherin 11 Y-linked isoform b PCDH11Y 0.258 protocadherin 11 Y-linked isoform a PCDH20 0.169 protocadherin 20 PCDH17 0.135 protocadherin 17 precursor DCHS1 0.132 dachsous 1 precursor FAT4 0.130 FAT tumor suppressor homolog 4 PCDHAC2 0.130 protocadherin alpha subfamily C, 2 isoform 1 precurso... PCDHAC2 0.130 protocadherin alpha subfamily C, 2 isoform 2 precurs... PCDH10 0.129 protocadherin 10 isoform 1 precursor PCDH10 0.129 protocadherin 10 isoform 2 precursor PCDHB7 0.129 protocadherin beta 7 precursor PCDHGB5 0.128 protocadherin gamma subfamily B, 5 isoform 2 precurs... PCDHGB5 0.128 protocadherin gamma subfamily B, 5 isoform 1 precurs... PCDHB11 0.128 protocadherin beta 11 precursor PCDHGB2 0.127 protocadherin gamma subfamily B, 2 isoform 1 precurs... PCDHGB2 0.127 protocadherin gamma subfamily B, 2 isoform 2 precurs... PCDHB12 0.126 protocadherin beta 12 precursor PCDHB15 0.126 protocadherin beta 15 precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.