PCDH11Y 4185

Name: PCDH11Y	Sequence: fasta or formatted (1340aa)		NCBI GI: 14589946
Description: protocadherin 11 Y-linked isoform c		Referenced in: Cadherins and Related Proteins Y-linked Genes
Other entries for this name: alt prot [1037aa] protocadherin 11 Y-linked isoform a alt prot [1048aa] protocadherin 11 Y-linked isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.2 83 3 C cysteine 1.4 19 1 D aspartate 6.6 88 2 E glutamate 5.6 75 2 F phenylalanine 3.4 46 1 G glycine 4.6 61 2 H histidine 2.8 37 2 I isoleucine 6.4 86 2 K lysine 4.5 60 8 L leucine 8.4 113 3 M methionine 1.4 19 2 N asparagine 5.9 79 2 P proline 7.2 97 3 Q glutamine 4.0 54 2 R arginine 3.4 46 2 S serine 9.0 120 5 T threonine 7.5 100 3 V valine 9.0 121 4 W tryptophan 0.3 4 1 Y tyrosine 2.4 32 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 protocadherin 11 Y-linked isoform c PCDH11X 0.948 protocadherin 11 X-linked isoform d PCDH11X 0.946 protocadherin 11 X-linked isoform c PCDH11Y 0.772 protocadherin 11 Y-linked isoform b PCDH11Y 0.758 protocadherin 11 Y-linked isoform a PCDH11X 0.733 protocadherin 11 X-linked isoform b precursor PCDH11X 0.732 protocadherin 11 X-linked isoform a precursor PCDH9 0.481 protocadherin 9 isoform 2 precursor PCDH9 0.475 protocadherin 9 isoform 1 precursor PCDH1 0.252 protocadherin 1 isoform 2 precursor PCDH1 0.238 protocadherin 1 isoform 1 precursor PCDH20 0.226 protocadherin 20 PCDH7 0.223 protocadherin 7 isoform c precursor PCDH7 0.220 protocadherin 7 isoform b precursor PCDH7 0.220 protocadherin 7 isoform a precursor PCDHGA10 0.129 protocadherin gamma subfamily A, 10 isoform 1 precur... PCDHGA10 0.129 protocadherin gamma subfamily A, 10 isoform 2 precur... PCDH18 0.127 protocadherin 18 precursor PCDH19 0.125 protocadherin 19 isoform a PCDH19 0.125 protocadherin 19 isoform b PCDH17 0.125 protocadherin 17 precursor PCDHGA12 0.124 protocadherin gamma subfamily A, 12 isoform 1 precurs... PCDHGA12 0.124 protocadherin gamma subfamily A, 12 isoform 2 precur... PCDHGB1 0.122 protocadherin gamma subfamily B, 1 isoform 2 precurs... PCDHGB1 0.122 protocadherin gamma subfamily B, 1 isoform 1 precurs... PCDH10 0.122 protocadherin 10 isoform 1 precursor PCDH10 0.122 protocadherin 10 isoform 2 precursor PCDHGA7 0.121 protocadherin gamma subfamily A, 7 isoform 1 precurs... PCDHGA7 0.121 protocadherin gamma subfamily A, 7 isoform 2 precurs... PCDHGA11 0.121 protocadherin gamma subfamily A, 11 isoform 2 precur... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.