Guide to the Human Genome
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Name: AVP Sequence: fasta or formatted (164aa) NCBI GI: 13259533
Description:

arginine vasopressin-neurophysin II preproprotein

Referenced in:

Hypothalamus
Peptide and Protein G-coupled Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         19           2
 C cysteine           10.4         17           2
 D aspartate           4.3          7           1
 E glutamate           6.7         11           2
 F phenylalanine       4.9          8           1
 G glycine            11.6         19           2
 H histidine           0.6          1           1
 I isoleucine          0.6          1           1
 K lysine              1.8          3           1
 L leucine             9.8         16           3
 M methionine          1.8          3           1
 N asparagine          2.4          4           1
 P proline             8.5         14           1
 Q glutamine           4.9          8           1
 R arginine            7.3         12           2
 S serine              6.1         10           2
 T threonine           2.4          4           1
 V valine              2.4          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   arginine vasopressin-neurophysin II preproprotein [H... 
OXT                   0.541   oxytocin-neurophysin I preproprotein 
KRTAP10-6             0.030   keratin associated protein 10-6 
KRTAP10-4             0.030   keratin associated protein 10-4 
TNXB                  0.027   tenascin XB isoform 1 precursor 
KRTAP5-8              0.024   keratin associated protein 5-8 
ODZ2                  0.024   odz, odd Oz/ten-m homolog 2 
ERBB3                 0.024   erbB-3 isoform 1 precursor 
NID2                  0.024   nidogen 2 precursor 
LRP2                  0.021   low density lipoprotein-related protein 2 
ODZ4                  0.021   odz, odd Oz/ten-m homolog 4 
HSPG2                 0.021   heparan sulfate proteoglycan 2 
ADAM11                0.021   ADAM metallopeptidase domain 11 preproprotein 
TIE1                  0.018   tyrosine kinase with immunoglobulin-like and EGF-like...
TMPRSS6               0.018   transmembrane protease, serine 6 
KRTAP5-5              0.018   keratin associated protein 5-5 
LRP1B                 0.018   low density lipoprotein-related protein 1B precursor...
MEGF8                 0.018   multiple EGF-like-domains 8 
STAB2                 0.018   stabilin 2 precursor 
KRTAP10-12            0.018   keratin associated protein 10-12 
KRTAP5-1              0.018   keratin associated protein 5-1 
KRT40                 0.015   type I hair keratin KA36 
LRP8                  0.015   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.015   low density lipoprotein receptor-related protein 8 i...
JAG2                  0.015   jagged 2 isoform b precursor 
JAG2                  0.015   jagged 2 isoform a precursor 
KRTAP10-8             0.015   keratin associated protein 10-8 
KRTAP5-4              0.015   keratin associated protein 5-4 
AGRN                  0.015   agrin 
DLK1                  0.015   delta-like 1 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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