Guide to the Human Genome
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Name: LRP2 Sequence: fasta or formatted (4655aa) NCBI GI: 126012573
Description:

low density lipoprotein-related protein 2

Referenced in:

Epidermal Growth Factor
Lipoproteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6        213           2
 C cysteine            7.1        329           1
 D aspartate           8.7        405           3
 E glutamate           5.3        247           2
 F phenylalanine       3.7        171           2
 G glycine             7.2        337           2
 H histidine           2.9        136           2
 I isoleucine          5.4        250           2
 K lysine              3.5        164           2
 L leucine             6.2        287           4
 M methionine          1.5         70           2
 N asparagine          6.3        294           3
 P proline             5.0        231           3
 Q glutamine           3.5        165           2
 R arginine            5.3        245           3
 S serine              7.3        339           3
 T threonine           5.5        257           2
 V valine              5.6        260           3
 W tryptophan          1.9         90           2
 Y tyrosine            3.5        165           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   low density lipoprotein-related protein 2 
LRP1                  0.282   low density lipoprotein-related protein 1 
LRP1B                 0.260   low density lipoprotein-related protein 1B precursor...
LRP4                  0.103   low density lipoprotein receptor-related protein 4 ...
LRP6                  0.066   low density lipoprotein receptor-related protein 6 ...
LRP5                  0.065   low density lipoprotein receptor-related protein 5 ...
VLDLR                 0.049   very low density lipoprotein receptor isoform b [Hom...
VLDLR                 0.049   very low density lipoprotein receptor isoform a [Hom...
LRP8                  0.048   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.048   low density lipoprotein receptor-related protein 8 i...
LDLR                  0.046   low density lipoprotein receptor precursor 
SORL1                 0.045   sortilin-related receptor containing LDLR class A rep...
LRP8                  0.038   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.035   low density lipoprotein receptor-related protein 8 i...
EGF                   0.021   epidermal growth factor (beta-urogastrone) 
SSPO                  0.017   SCO-spondin 
CORIN                 0.017   corin 
NID1                  0.013   nidogen 1 precursor 
ST14                  0.012   matriptase 
LRP5L                 0.012   low density lipoprotein receptor-related protein 5-l...
LRP5L                 0.012   low density lipoprotein receptor-related protein 5-...
LRP3                  0.010   low density lipoprotein receptor-related protein 3 ...
HSPG2                 0.010   heparan sulfate proteoglycan 2 
NID2                  0.010   nidogen 2 precursor 
LRP12                 0.010   low density lipoprotein-related protein 12 isoform ...
LRP12                 0.010   low density lipoprotein-related protein 12 isoform a ...
LDLRAD3               0.010   low density lipoprotein receptor class A domain cont...
FBN1                  0.009   fibrillin 1 precursor 
FBLN2                 0.009   fibulin 2 isoform a precursor 
FBN2                  0.008   fibrillin 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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