Guide to the Human Genome
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Name: KRT40 Sequence: fasta or formatted (431aa) NCBI GI: 125490370
Description:

type I hair keratin KA36

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         27           1
 C cysteine            7.9         34           2
 D aspartate           4.9         21           2
 E glutamate          12.1         52           3
 F phenylalanine       1.4          6           1
 G glycine             3.0         13           1
 H histidine           0.9          4           1
 I isoleucine          3.0         13           1
 K lysine              3.0         13           2
 L leucine            13.9         60           2
 M methionine          1.2          5           1
 N asparagine          4.6         20           2
 P proline             2.6         11           1
 Q glutamine           7.0         30           3
 R arginine            4.6         20           2
 S serine             10.0         43           2
 T threonine           7.0         30           2
 V valine              3.9         17           1
 W tryptophan          0.7          3           1
 Y tyrosine            2.1          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   type I hair keratin KA36 
KRT34                 0.554   keratin 34 
KRT35                 0.553   keratin 35 
KRT36                 0.553   keratin 36 
KRT31                 0.533   keratin 31 
KRT33A                0.531   keratin 33A 
KRT32                 0.527   keratin 32 
KRT33B                0.514   type I hair keratin 3B 
KRT39                 0.480   type I hair keratin KA35 
KRT38                 0.456   keratin 38 
KRT37                 0.446   keratin 37 
KRT14                 0.374   keratin 14 
KRT17                 0.368   keratin 17 
KRT16                 0.362   keratin 16 
KRT19                 0.354   keratin 19 
KRT15                 0.351   keratin 15 
KRT13                 0.349   keratin 13 isoform a 
KRT13                 0.344   keratin 13 isoform b 
KRT12                 0.320   keratin 12 
KRT10                 0.318   keratin 10 
KRT20                 0.316   keratin 20 
KRT27                 0.307   keratin 27 
KRT28                 0.298   keratin 25D 
KRT24                 0.295   keratin 24 
KRT25                 0.292   keratin 25 
KRT26                 0.280   keratin 26 
KRT9                  0.269   keratin 9 
KRT18                 0.267   keratin 18 
KRT18                 0.267   keratin 18 
KRT23                 0.253   keratin 23 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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