Guide to the Human Genome
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Name: CCL16 Sequence: fasta or formatted (120aa) NCBI GI: 4759074
Description:

small inducible cytokine A16 precursor

Referenced in:

Chemokines and Their Receptors
Liver
Macrophages and Monocytes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0          6           2
 C cysteine            3.3          4           2
 D aspartate           2.5          3           2
 E glutamate           4.2          5           1
 F phenylalanine       0.8          1           1
 G glycine             1.7          2           1
 H histidine           0.8          1           1
 I isoleucine          6.7          8           2
 K lysine              7.5          9           1
 L leucine            13.3         16           2
 M methionine          0.8          1           1
 N asparagine          7.5          9           1
 P proline             8.3         10           1
 Q glutamine           4.2          5           1
 R arginine            5.8          7           2
 S serine              6.7          8           1
 T threonine           6.7          8           1
 V valine              9.2         11           2
 W tryptophan          1.7          2           1
 Y tyrosine            3.3          4           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small inducible cytokine A16 precursor 
CCL4L1                0.227   chemokine (C-C motif) ligand 4-like 1 precursor [Hom...
CCL4L2                0.227   chemokine (C-C motif) ligand 4-like 2 precursor [Hom...
CCL4                  0.223   chemokine C-C motif ligand 4 isoform 1 precursor [Hom...
CCL3L1                0.218   chemokine (C-C motif) ligand 3-like 1 precursor [Hom...
CCL3L3                0.218   chemokine (C-C motif) ligand 3-like 3 precursor [Hom...
CCL14                 0.214   chemokine (C-C motif) ligand 14 isoform 1 precursor ...
CCL3                  0.209   chemokine (C-C motif) ligand 3 
CCL14                 0.205   chemokine (C-C motif) ligand 14 isoform 2 precursor ...
CCL7                  0.195   chemokine (C-C motif) ligand 7 precursor 
CCL5                  0.182   small inducible cytokine A5 precursor 
CCL8                  0.159   small inducible cytokine A8 precursor 
CCL18                 0.159   small inducible cytokine A18 precursor 
CCL13                 0.150   small inducible cytokine A13 precursor 
CCL17                 0.141   small inducible cytokine A17 precursor 
CCL26                 0.141   chemokine (C-C motif) ligand 26 precursor 
CCL21                 0.136   small inducible cytokine A21 precursor 
CCL15                 0.123   chemokine (C-C motif) ligand 15 precursor 
CCL23                 0.123   small inducible cytokine A23 isoform CKbeta8 precurs...
CCL2                  0.123   small inducible cytokine A2 precursor 
CCL11                 0.123   small inducible cytokine A11 precursor 
CCL24                 0.114   small inducible cytokine A24 precursor 
CCL20                 0.109   chemokine (C-C motif) ligand 20 isoform 2 
CCL20                 0.109   chemokine (C-C motif) ligand 20 isoform 1 
CCL19                 0.100   small inducible cytokine A19 precursor 
CCL23                 0.091   small inducible cytokine A23 isoform CKbeta8-1 precu...
CCL22                 0.086   small inducible cytokine A22 precursor 
CXCL12                0.068   chemokine (C-X-C motif) ligand 12 (stromal cell-deri...
CXCL12                0.068   chemokine (C-X-C motif) ligand 12 (stromal cell-deri...
CXCL12                0.068   chemokine (C-X-C motif) ligand 12 (stromal cell-deri...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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