Guide to the Human Genome
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Name: CCL22 Sequence: fasta or formatted (93aa) NCBI GI: 22538804
Description:

small inducible cytokine A22 precursor

Referenced in:

Chemokines and Their Receptors
Macrophages and Monocytes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5          7           1
 C cysteine            4.3          4           2
 D aspartate           6.5          6           1
 E glutamate           3.2          3           1
 F phenylalanine       2.2          2           1
 G glycine             3.2          3           1
 H histidine           1.1          1           1
 I isoleucine          2.2          2           1
 K lysine              4.3          4           1
 L leucine            14.0         13           2
 M methionine          3.2          3           1
 N asparagine          2.2          2           1
 P proline             6.5          6           1
 Q glutamine           3.2          3           1
 R arginine            8.6          8           1
 S serine              4.3          4           1
 T threonine           4.3          4           1
 V valine             12.9         12           2
 W tryptophan          2.2          2           1
 Y tyrosine            4.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small inducible cytokine A22 precursor 
CCL18                 0.232   small inducible cytokine A18 precursor 
CCL5                  0.220   small inducible cytokine A5 precursor 
CCL4L1                0.196   chemokine (C-C motif) ligand 4-like 1 precursor [Hom...
CCL4L2                0.196   chemokine (C-C motif) ligand 4-like 2 precursor [Hom...
CCL14                 0.190   chemokine (C-C motif) ligand 14 isoform 1 precursor ...
CCL4                  0.190   chemokine C-C motif ligand 4 isoform 1 precursor [Hom...
CCL3L1                0.185   chemokine (C-C motif) ligand 3-like 1 precursor [Hom...
CCL3L3                0.185   chemokine (C-C motif) ligand 3-like 3 precursor [Hom...
CCL3                  0.185   chemokine (C-C motif) ligand 3 
CCL8                  0.167   small inducible cytokine A8 precursor 
CCL15                 0.167   chemokine (C-C motif) ligand 15 precursor 
CCL7                  0.161   chemokine (C-C motif) ligand 7 precursor 
CCL14                 0.161   chemokine (C-C motif) ligand 14 isoform 2 precursor ...
CCL17                 0.161   small inducible cytokine A17 precursor 
CCL13                 0.155   small inducible cytokine A13 precursor 
CCL19                 0.149   small inducible cytokine A19 precursor 
CCL2                  0.131   small inducible cytokine A2 precursor 
CCL11                 0.131   small inducible cytokine A11 precursor 
CCL24                 0.125   small inducible cytokine A24 precursor 
CCL26                 0.119   chemokine (C-C motif) ligand 26 precursor 
CCL23                 0.113   small inducible cytokine A23 isoform CKbeta8-1 precu...
CCL16                 0.113   small inducible cytokine A16 precursor 
CCL21                 0.107   small inducible cytokine A21 precursor 
CCL23                 0.101   small inducible cytokine A23 isoform CKbeta8 precurs...
XCL1                  0.095   chemokine (C motif) ligand 1 
CCL1                  0.083   small inducible cytokine A1 precursor 
XCL2                  0.077   chemokine (C motif) ligand 2 
CXCL5                 0.077   chemokine (C-X-C motif) ligand 5 precursor 
CXCL6                 0.071   chemokine (C-X-C motif) ligand 6 (granulocyte chemota...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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