Guide to the Human Genome
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Name: CCL5 Sequence: fasta or formatted (91aa) NCBI GI: 22538814
Description:

small inducible cytokine A5 precursor

Referenced in:

Chemokines and Their Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.4         14           3
 C cysteine            5.5          5           2
 D aspartate           1.1          1           1
 E glutamate           4.4          4           1
 F phenylalanine       3.3          3           1
 G glycine             1.1          1           1
 H histidine           1.1          1           1
 I isoleucine          5.5          5           1
 K lysine              6.6          6           2
 L leucine             5.5          5           1
 M methionine          2.2          2           1
 N asparagine          4.4          4           1
 P proline             7.7          7           1
 Q glutamine           1.1          1           1
 R arginine            5.5          5           1
 S serine              9.9          9           2
 T threonine           5.5          5           2
 V valine              7.7          7           2
 W tryptophan          1.1          1           1
 Y tyrosine            5.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small inducible cytokine A5 precursor 
CCL3L1                0.479   chemokine (C-C motif) ligand 3-like 1 precursor [Hom...
CCL3L3                0.479   chemokine (C-C motif) ligand 3-like 3 precursor [Hom...
CCL3                  0.472   chemokine (C-C motif) ligand 3 
CCL4                  0.454   chemokine C-C motif ligand 4 isoform 1 precursor [Hom...
CCL4L1                0.423   chemokine (C-C motif) ligand 4-like 1 precursor [Hom...
CCL4L2                0.423   chemokine (C-C motif) ligand 4-like 2 precursor [Hom...
CCL14                 0.313   chemokine (C-C motif) ligand 14 isoform 1 precursor ...
CCL18                 0.313   small inducible cytokine A18 precursor 
CCL14                 0.282   chemokine (C-C motif) ligand 14 isoform 2 precursor ...
CCL11                 0.282   small inducible cytokine A11 precursor 
CCL26                 0.282   chemokine (C-C motif) ligand 26 precursor 
CCL7                  0.264   chemokine (C-C motif) ligand 7 precursor 
CCL23                 0.258   small inducible cytokine A23 isoform CKbeta8 precurs...
CCL13                 0.252   small inducible cytokine A13 precursor 
CCL16                 0.245   small inducible cytokine A16 precursor 
CCL8                  0.239   small inducible cytokine A8 precursor 
CCL15                 0.233   chemokine (C-C motif) ligand 15 precursor 
CCL22                 0.227   small inducible cytokine A22 precursor 
CCL23                 0.221   small inducible cytokine A23 isoform CKbeta8-1 precu...
CCL2                  0.202   small inducible cytokine A2 precursor 
CCL19                 0.178   small inducible cytokine A19 precursor 
CCL17                 0.166   small inducible cytokine A17 precursor 
CCL24                 0.160   small inducible cytokine A24 precursor 
XCL1                  0.153   chemokine (C motif) ligand 1 
XCL2                  0.147   chemokine (C motif) ligand 2 
CCL21                 0.117   small inducible cytokine A21 precursor 
CXCL12                0.110   chemokine (C-X-C motif) ligand 12 (stromal cell-deri...
CXCL12                0.110   chemokine (C-X-C motif) ligand 12 (stromal cell-deri...
CXCL12                0.110   chemokine (C-X-C motif) ligand 12 (stromal cell-deri...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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