Guide to the Human Genome
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Name: CCL4 Sequence: fasta or formatted (92aa) NCBI GI: 4506845
Description:

chemokine C-C motif ligand 4 isoform 1 precursor

Referenced in:

Chemokines and Their Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7          8           2
 C cysteine            6.5          6           2
 D aspartate           4.3          4           1
 E glutamate           4.3          4           1
 F phenylalanine       4.3          4           1
 G glycine             1.1          1           1
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine              4.3          4           1
 L leucine            10.9         10           2
 M methionine          3.3          3           1
 N asparagine          2.2          2           1
 P proline             7.6          7           2
 Q glutamine           4.3          4           1
 R arginine            3.3          3           1
 S serine             12.0         11           2
 T threonine           5.4          5           1
 V valine             10.9         10           2
 W tryptophan          1.1          1           1
 Y tyrosine            5.4          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chemokine C-C motif ligand 4 isoform 1 precursor [Hom... 
CCL4L1                0.958   chemokine (C-C motif) ligand 4-like 1 precursor [Hom...
CCL4L2                0.958   chemokine (C-C motif) ligand 4-like 2 precursor [Hom...
CCL3L1                0.614   chemokine (C-C motif) ligand 3-like 1 precursor [Hom...
CCL3L3                0.614   chemokine (C-C motif) ligand 3-like 3 precursor [Hom...
CCL3                  0.566   chemokine (C-C motif) ligand 3 
CCL5                  0.446   small inducible cytokine A5 precursor 
CCL14                 0.398   chemokine (C-C motif) ligand 14 isoform 1 precursor ...
CCL14                 0.361   chemokine (C-C motif) ligand 14 isoform 2 precursor ...
CCL18                 0.355   small inducible cytokine A18 precursor 
CCL13                 0.337   small inducible cytokine A13 precursor 
CCL7                  0.319   chemokine (C-C motif) ligand 7 precursor 
CCL16                 0.295   small inducible cytokine A16 precursor 
CCL11                 0.283   small inducible cytokine A11 precursor 
CCL8                  0.277   small inducible cytokine A8 precursor 
CCL2                  0.271   small inducible cytokine A2 precursor 
CCL26                 0.271   chemokine (C-C motif) ligand 26 precursor 
CCL23                 0.253   small inducible cytokine A23 isoform CKbeta8 precurs...
CCL15                 0.235   chemokine (C-C motif) ligand 15 precursor 
CCL23                 0.229   small inducible cytokine A23 isoform CKbeta8-1 precu...
CCL24                 0.211   small inducible cytokine A24 precursor 
CCL22                 0.193   small inducible cytokine A22 precursor 
CCL1                  0.193   small inducible cytokine A1 precursor 
CCL21                 0.193   small inducible cytokine A21 precursor 
CCL19                 0.157   small inducible cytokine A19 precursor 
CCL17                 0.139   small inducible cytokine A17 precursor 
CX3CL1                0.127   chemokine (C-X3-C motif) ligand 1 
CCL20                 0.120   chemokine (C-C motif) ligand 20 isoform 1 
CCL20                 0.114   chemokine (C-C motif) ligand 20 isoform 2 
XCL1                  0.114   chemokine (C motif) ligand 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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