Guide to the Human Genome
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Name: CCL23 Sequence: fasta or formatted (137aa) NCBI GI: 22538806
Description:

small inducible cytokine A23 isoform CKbeta8-1 precursor

Referenced in:

Chemokines and Their Receptors
Macrophages and Monocytes

Other entries for this name:
alt prot [120aa] small inducible cytokine A23 isoform CKbeta8 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         10           2
 C cysteine            5.1          7           2
 D aspartate           3.6          5           1
 E glutamate           4.4          6           1
 F phenylalanine       3.6          5           1
 G glycine             3.6          5           1
 H histidine           1.5          2           1
 I isoleucine          3.6          5           1
 K lysine              8.0         11           2
 L leucine            10.9         15           2
 M methionine          5.1          7           2
 N asparagine          2.9          4           1
 P proline             5.1          7           1
 Q glutamine           2.9          4           1
 R arginine            6.6          9           2
 S serine              9.5         13           1
 T threonine           7.3         10           1
 V valine              6.6          9           1
 W tryptophan          0.7          1           1
 Y tyrosine            1.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small inducible cytokine A23 isoform CKbeta8-1 precu... 
CCL23                 0.806   small inducible cytokine A23 isoform CKbeta8 precurs...
CCL15                 0.490   chemokine (C-C motif) ligand 15 precursor 
CCL14                 0.206   chemokine (C-C motif) ligand 14 isoform 2 precursor ...
CCL3                  0.202   chemokine (C-C motif) ligand 3 
CCL3L1                0.202   chemokine (C-C motif) ligand 3-like 1 precursor [Hom...
CCL3L3                0.202   chemokine (C-C motif) ligand 3-like 3 precursor [Hom...
CCL14                 0.194   chemokine (C-C motif) ligand 14 isoform 1 precursor ...
CCL4L1                0.158   chemokine (C-C motif) ligand 4-like 1 precursor [Hom...
CCL4L2                0.158   chemokine (C-C motif) ligand 4-like 2 precursor [Hom...
CCL18                 0.158   small inducible cytokine A18 precursor 
CCL4                  0.150   chemokine C-C motif ligand 4 isoform 1 precursor [Hom...
CCL5                  0.142   small inducible cytokine A5 precursor 
CCL17                 0.138   small inducible cytokine A17 precursor 
CCL26                 0.115   chemokine (C-C motif) ligand 26 precursor 
CCL8                  0.099   small inducible cytokine A8 precursor 
CCL13                 0.095   small inducible cytokine A13 precursor 
CCL11                 0.095   small inducible cytokine A11 precursor 
CCL7                  0.095   chemokine (C-C motif) ligand 7 precursor 
CCL24                 0.091   small inducible cytokine A24 precursor 
CCL16                 0.079   small inducible cytokine A16 precursor 
CCL22                 0.075   small inducible cytokine A22 precursor 
XCL1                  0.075   chemokine (C motif) ligand 1 
CCL19                 0.075   small inducible cytokine A19 precursor 
XCL2                  0.075   chemokine (C motif) ligand 2 
CCL21                 0.071   small inducible cytokine A21 precursor 
CCL2                  0.071   small inducible cytokine A2 precursor 
CCL20                 0.067   chemokine (C-C motif) ligand 20 isoform 2 
CCL20                 0.067   chemokine (C-C motif) ligand 20 isoform 1 
CCL1                  0.067   small inducible cytokine A1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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