Guide to the Human Genome
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Name: CCL26 Sequence: fasta or formatted (94aa) NCBI GI: 5174671
Description:

chemokine (C-C motif) ligand 26 precursor

Referenced in:

Chemokines and Their Receptors
Neutrophils, Eosinophils, and Basophils

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3          5           1
 C cysteine            4.3          4           2
 D aspartate           1.1          1           1
 E glutamate           1.1          1           1
 F phenylalanine       3.2          3           1
 G glycine             4.3          4           1
 H histidine           3.2          3           1
 I isoleucine          3.2          3           1
 K lysine             10.6         10           2
 L leucine            12.8         12           2
 M methionine          2.1          2           2
 N asparagine          1.1          1           1
 P proline             4.3          4           1
 Q glutamine           4.3          4           1
 R arginine            5.3          5           1
 S serine             12.8         12           1
 T threonine           9.6          9           2
 V valine              5.3          5           1
 W tryptophan          3.2          3           1
 Y tyrosine            3.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chemokine (C-C motif) ligand 26 precursor 
CCL4L1                0.304   chemokine (C-C motif) ligand 4-like 1 precursor [Hom...
CCL4L2                0.304   chemokine (C-C motif) ligand 4-like 2 precursor [Hom...
CCL3                  0.281   chemokine (C-C motif) ligand 3 
CCL3L1                0.275   chemokine (C-C motif) ligand 3-like 1 precursor [Hom...
CCL3L3                0.275   chemokine (C-C motif) ligand 3-like 3 precursor [Hom...
CCL5                  0.269   small inducible cytokine A5 precursor 
CCL4                  0.263   chemokine C-C motif ligand 4 isoform 1 precursor [Hom...
CCL13                 0.246   small inducible cytokine A13 precursor 
CCL14                 0.240   chemokine (C-C motif) ligand 14 isoform 1 precursor ...
CCL18                 0.234   small inducible cytokine A18 precursor 
CCL14                 0.205   chemokine (C-C motif) ligand 14 isoform 2 precursor ...
CCL11                 0.199   small inducible cytokine A11 precursor 
CCL17                 0.199   small inducible cytokine A17 precursor 
CCL7                  0.199   chemokine (C-C motif) ligand 7 precursor 
CCL16                 0.181   small inducible cytokine A16 precursor 
CCL24                 0.175   small inducible cytokine A24 precursor 
CCL23                 0.170   small inducible cytokine A23 isoform CKbeta8-1 precu...
CCL23                 0.170   small inducible cytokine A23 isoform CKbeta8 precurs...
CCL8                  0.164   small inducible cytokine A8 precursor 
CCL19                 0.164   small inducible cytokine A19 precursor 
CCL15                 0.158   chemokine (C-C motif) ligand 15 precursor 
CCL1                  0.140   small inducible cytokine A1 precursor 
CCL2                  0.140   small inducible cytokine A2 precursor 
XCL1                  0.129   chemokine (C motif) ligand 1 
CCL22                 0.117   small inducible cytokine A22 precursor 
XCL2                  0.117   chemokine (C motif) ligand 2 
CCL21                 0.117   small inducible cytokine A21 precursor 
CCL25                 0.111   small inducible cytokine A25 precursor 
CCL20                 0.111   chemokine (C-C motif) ligand 20 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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