Guide to the Human Genome
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Name: CCL3L1 Sequence: fasta or formatted (93aa) NCBI GI: 27477072
Description:

chemokine (C-C motif) ligand 3-like 1 precursor

Referenced in:

Chemokines and Their Receptors
Polymorphism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         11           2
 C cysteine            6.5          6           2
 D aspartate           4.3          4           1
 E glutamate           4.3          4           2
 F phenylalanine       4.3          4           1
 G glycine             1.1          1           1
 H histidine           0.0          0           0
 I isoleucine          3.2          3           1
 K lysine              3.2          3           1
 L leucine             9.7          9           2
 M methionine          2.2          2           1
 N asparagine          2.2          2           1
 P proline             5.4          5           1
 Q glutamine           7.5          7           1
 R arginine            3.2          3           1
 S serine             11.8         11           2
 T threonine           7.5          7           1
 V valine              7.5          7           1
 W tryptophan          1.1          1           1
 Y tyrosine            3.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chemokine (C-C motif) ligand 3-like 1 precursor [Hom... 
CCL3L3                1.000   chemokine (C-C motif) ligand 3-like 3 precursor [Hom...
CCL3                  0.915   chemokine (C-C motif) ligand 3 
CCL4L1                0.634   chemokine (C-C motif) ligand 4-like 1 precursor [Hom...
CCL4L2                0.634   chemokine (C-C motif) ligand 4-like 2 precursor [Hom...
CCL4                  0.622   chemokine C-C motif ligand 4 isoform 1 precursor [Hom...
CCL18                 0.537   small inducible cytokine A18 precursor 
CCL5                  0.476   small inducible cytokine A5 precursor 
CCL14                 0.439   chemokine (C-C motif) ligand 14 isoform 1 precursor ...
CCL14                 0.390   chemokine (C-C motif) ligand 14 isoform 2 precursor ...
CCL13                 0.354   small inducible cytokine A13 precursor 
CCL23                 0.341   small inducible cytokine A23 isoform CKbeta8 precurs...
CCL15                 0.311   chemokine (C-C motif) ligand 15 precursor 
CCL23                 0.311   small inducible cytokine A23 isoform CKbeta8-1 precu...
CCL7                  0.305   chemokine (C-C motif) ligand 7 precursor 
CCL8                  0.305   small inducible cytokine A8 precursor 
CCL16                 0.293   small inducible cytokine A16 precursor 
CCL2                  0.287   small inducible cytokine A2 precursor 
CCL26                 0.287   chemokine (C-C motif) ligand 26 precursor 
CCL11                 0.268   small inducible cytokine A11 precursor 
CCL24                 0.256   small inducible cytokine A24 precursor 
CCL22                 0.189   small inducible cytokine A22 precursor 
CCL1                  0.189   small inducible cytokine A1 precursor 
CCL19                 0.183   small inducible cytokine A19 precursor 
CCL17                 0.177   small inducible cytokine A17 precursor 
CCL21                 0.152   small inducible cytokine A21 precursor 
XCL1                  0.134   chemokine (C motif) ligand 1 
XCL2                  0.134   chemokine (C motif) ligand 2 
IL8                   0.122   interleukin 8 precursor 
CX3CL1                0.104   chemokine (C-X3-C motif) ligand 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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